C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003MS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100335-ENSG00000128272 CGP 9606 22:39499432-39522685
GeneTranscriptPositionBiotype
ENSG00000100335 (MIEF1)
mitochondrial elongation factor 1 		ENST00000325301 (MIEF1-001) 39502353-39518132 protein_coding
ENST00000402881 (MIEF1-005) 39500100-39515708 protein_coding
ENST00000404569 (MIEF1-003) 39502377-39516178 protein_coding
ENST00000428069 (MIEF1-004) 39502397-39513866 nonsense_mediated_decay
ENST00000433117 (MIEF1-002) 39502302-39516380 nonsense_mediated_decay
ENST00000434364 (MIEF1-015) 39502395-39511422 protein_coding
ENST00000464629 (MIEF1-007) 39499432-39504302 processed_transcript
ENST00000465564 (MIEF1-009) 39501731-39502385 processed_transcript
ENST00000467866 (MIEF1-008) 39500347-39504454 processed_transcript
ENST00000478342 (MIEF1-011) 39502252-39504534 processed_transcript
ENST00000479514 (MIEF1-013) 39503457-39504510 processed_transcript
ENST00000481746 (MIEF1-012) 39502256-39504485 processed_transcript
ENST00000489792 (MIEF1-010) 39502211-39503862 processed_transcript
ENST00000494219 (MIEF1-014) 39502355-39504711 retained_intron
ENSG00000128272 (ATF4)
activating transcription factor 4 		ENST00000337304 (ATF4-002) 39520564-39522683 protein_coding
ENST00000396680 (ATF4-201) 39520564-39522685 protein_coding
ENST00000404241 (ATF4-001) 39519695-39522683 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003MS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022412-ENSMUSG00000042406 CGP 10090 15:80234080-80257540
GeneTranscriptPositionBiotype
ENSMUSG00000022412 (Mief1)
mitochondrial elongation factor 1 		ENSMUST00000023048 (Mief1-201) 80234080-80253366 protein_coding
ENSMUST00000166030 (Mief1-202) 80234108-80250565 protein_coding
ENSMUSG00000042406 (Atf4)
activating transcription factor 4 		ENSMUST00000109605 (Atf4-201) 80255184-80257540 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MS_0001ENSG00000100335ENST00000325301ENST00000402881ENST00000404569ENST00000428069ENST00000433117ENST00000434364ENST00000464629ENST00000465564ENST00000467866ENST00000478342ENST00000479514ENST00000481746ENST00000489792ENST00000494219ENSG00000128272ENST00000337304ENST00000396680ENST00000404241CIL_0003MS_0002ENSMUSG00000022412ENSMUST00000023048ENSMUST00000166030ENSMUSG00000042406ENSMUST00000109605
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MS_0001ENSG00000100335ENST00000325301ENST00000404569ENST00000433117ENSG00000128272ENST00000337304ENST00000396680CIL_0003MS_0002ENSMUSG00000022412ENSMUST00000023048ENSMUST00000166030ENSMUSG00000042406ENSMUST00000109605
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100335 ENST00000325301 5.755±0.00 9.053±0.00 N/A 4.103±2.50 6.366±0.00 4.311±0.00 1.875±1.27 6.682±0.00 3.777±3.21 2.516±0.00 1.735±0.58 7.416±2.55 7.546±2.80 5.374±1.07
ENST00000402881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000404569 N/A N/A N/A N/A 1.890±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433117 1.723±0.00 N/A 1.254±0.00 2.325±0.65 1.470±0.00 3.793±0.00 0.861±0.44 N/A 2.331±0.00 0.842±0.21 2.105±0.00 2.482±0.70 1.650±0.43 8.611±3.81
ENST00000434364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128272 ENST00000337304 N/A 20.685±0.00 0.886±0.00 N/A 5.602±3.05 2.414±0.00 N/A N/A N/A N/A N/A 11.556±0.00 N/A 7.423±0.00
ENST00000396680 86.491±0.00 102.664±0.00 9.744±0.00 52.323±13.91 58.944±31.42 154.410±133.26 34.351±28.20 57.562±20.07 50.131±11.99 87.337±66.08 117.287±41.67 87.791±51.53 125.996±42.01 68.293±30.38
ENST00000404241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022412 ENSMUST00000023048 7.702±1.17 6.558±1.43 5.041±0.27 3.653±2.01 5.332±1.87 6.942±0.64 4.876±0.31 6.102±0.58 4.353±1.27 6.230±1.04 2.413±0.73 7.387±3.27 5.097±1.45 10.792±4.47
ENSMUST00000166030 1.286±0.00 3.723±1.57 N/A N/A 2.291±0.18 2.419±0.63 N/A N/A N/A N/A N/A 2.787±0.56 N/A 7.907±0.78
ENSMUSG00000042406 ENSMUST00000109605 79.694±1.15 105.314±29.77 133.505±45.57 94.348±34.20 93.196±6.19 84.040±8.50 34.973±2.89 55.921±9.50 130.122±79.87 83.060±4.42 86.328±14.00 104.648±27.16 118.440±16.56 21.705±4.04

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