C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173346 Pax2-004 ENSMUSG00000004231 10090 + 19:44759915-44818554 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverLungPlacentaENSMUST00000173346
Transcript ID Adipose Bladder Brain Liver Lung Placenta
ENSMUST00000173346 0.874±0.00 0.002±0.00 0.013±0.00 0.015±0.00 0.020±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_0005DR CIL_0005DR_0002 CGP 19:44562850-44837871
CIL_0007KC CIL_0007KC_0002 UCNEbase 19:44631441-44874931
CIL_0003MX CIL_0003MX_0002 CGP 19:44756045-44983787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001655 IMP urogenital system development
GO:0001656 IGI metanephros development
GO:0001657 IGI ureteric bud development
GO:0001658 IGI branching involved in ureteric bud morphogenesis
GO:0001709 IMP cell fate determination
GO:0001822 IGI kidney development
GO:0001823 IMP mesonephros development
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IMP camera-type eye development
GO:0043067 IGI regulation of programmed cell death
GO:0043069 IMP negative regulation of programmed cell death
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060231 IMP mesenchymal to epithelial transition
GO:0072001 IGI renal system development
GO:0090103 IMP cochlea morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000133796 pax2a-008 protein_coding Danio_rerio 0 455
ENSDART00000144443 pax2a-007 protein_coding Danio_rerio 0 455
ENSDART00000076998 pax2a-001 protein_coding Danio_rerio 0 451
ENSDART00000076992 pax2a-201 protein_coding Danio_rerio 0 381
ENSDART00000139782 pax2a-004 protein_coding Danio_rerio 0 381
ENSDART00000141310 pax2a-003 protein_coding Danio_rerio 0 381
ENSDART00000134424 pax2a-009 protein_coding Danio_rerio 0 377
ENSDART00000134330 pax2a-005 protein_coding Danio_rerio 0 377
ENSDART00000138332 pax2a-002 protein_coding Danio_rerio 0 377
ENST00000355243 PAX2-001 protein_coding Homo_sapiens 0 1206
ENST00000361791 PAX2-006 protein_coding Homo_sapiens 0 1201
ENST00000370296 PAX2-002 protein_coding Homo_sapiens 0 1206
ENST00000427256 PAX2-003 protein_coding Homo_sapiens 0 861
ENST00000428433 PAX2-201 protein_coding Homo_sapiens 0 861
ENST00000483202 PAX2-004 retained_intron Homo_sapiens 0 313
ENST00000553492 PAX2-008 processed_transcript Homo_sapiens 0 446
ENST00000554172 PAX2-005 protein_coding Homo_sapiens 0 1458
ENST00000554363 PAX2-007 processed_transcript Homo_sapiens 0 560

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