C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000076003-ENSG00000115866 CGP 9606 2:135839626-135986100
GeneTranscriptPositionBiotype
ENSG00000076003 (MCM6)
minichromosome maintenance complex component 6 		ENST00000264156 (MCM6-001) 135839626-135876426 protein_coding
ENST00000483902 (MCM6-002) 135848156-135851945 retained_intron
ENST00000492091 (MCM6-003) 135844608-135865051 processed_transcript
ENSG00000115866 (DARS)
aspartyl-tRNA synthetase 		ENST00000264161 (DARS-001) 135906677-135985684 protein_coding
ENST00000422708 (DARS-009) 135907260-135920553 protein_coding
ENST00000435076 (DARS-005) 135943179-135985563 nonsense_mediated_decay
ENST00000441323 (DARS-004) 135924418-135985884 protein_coding
ENST00000449218 (DARS-003) 135933909-135985897 protein_coding
ENST00000456565 (DARS-002) 135924437-135986100 protein_coding
ENST00000463008 (DARS-012) 135943386-135980551 processed_transcript
ENST00000474184 (DARS-008) 135978987-135983447 retained_intron
ENST00000478212 (DARS-006) 135906824-135911617 retained_intron
ENST00000489964 (DARS-010) 135907244-135914866 retained_intron
ENST00000491481 (DARS-011) 135910848-135912559 retained_intron
ENST00000537273 (DARS-201) 135907262-135985492 protein_coding
ENSG00000214070 (AC011999.1)
 ENST00000424794 (AC011999.1-001) 135897955-135898978 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003NC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026355-ENSMUSG00000026356 CGP 10090 1:128331590-128417368
GeneTranscriptPositionBiotype
ENSMUSG00000026355 (Mcm6)
minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) 		ENSMUST00000027601 (Mcm6-001) 128331590-128359664 protein_coding
ENSMUST00000188755 (Mcm6-002) 128341023-128343463 retained_intron
ENSMUST00000190495 (Mcm6-004) 128331593-128359647 protein_coding
ENSMUST00000191454 (Mcm6-003) 128339468-128346042 retained_intron
ENSMUSG00000026356 (Dars)
aspartyl-tRNA synthetase 		ENSMUST00000027602 (Dars-001) 128363707-128417359 protein_coding
ENSMUST00000064309 (Dars-003) 128412118-128417368 protein_coding
ENSMUST00000186398 (Dars-002) 128374891-128379487 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NC_0001ENSG00000076003ENST00000264156ENST00000483902ENST00000492091ENSG00000115866ENST00000264161ENST00000422708ENST00000435076ENST00000441323ENST00000449218ENST00000456565ENST00000463008ENST00000474184ENST00000478212ENST00000489964ENST00000491481ENST00000537273ENSG00000214070ENST00000424794CIL_0003NC_0002ENSMUSG00000026355ENSMUST00000027601ENSMUST00000188755ENSMUST00000190495ENSMUST00000191454ENSMUSG00000026356ENSMUST00000027602ENSMUST00000064309ENSMUST00000186398
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NC_0001ENSG00000076003ENST00000264156ENST00000492091ENSG00000115866ENST00000264161ENST00000435076ENST00000489964ENST00000537273ENSG00000214070ENST00000424794CIL_0003NC_0002ENSMUSG00000026355ENSMUST00000027601ENSMUST00000190495ENSMUST00000191454ENSMUSG00000026356ENSMUST00000027602ENSMUST00000064309
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076003 ENST00000264156 2.111±0.00 8.101±0.00 0.478±0.00 2.950±1.69 2.166±0.67 2.045±0.00 0.828±0.67 3.704±0.00 0.583±0.00 3.540±0.00 1.303±0.22 11.799±8.20 9.764±6.18 9.927±2.73
ENST00000483902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492091 N/A N/A N/A N/A 2.896±0.00 N/A 0.358±0.00 N/A 1.297±0.58 4.356±0.00 2.232±0.00 N/A N/A N/A
ENSG00000115866 ENST00000264161 16.694±0.00 23.820±0.00 N/A 8.826±1.91 11.417±3.08 17.866±9.05 9.832±4.12 14.296±5.48 11.551±2.93 9.838±1.53 9.599±7.16 23.484±2.12 17.262±3.68 11.962±6.67
ENST00000422708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.663±0.00 17.360±0.00 7.624±0.00
ENST00000441323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489964 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.004±0.00 N/A N/A N/A N/A
ENST00000491481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537273 12.654±0.00 10.217±0.00 7.517±0.00 10.745±0.73 11.495±2.84 10.489±1.82 7.530±0.84 8.114±0.38 11.257±6.99 9.352±3.18 11.951±0.00 17.492±8.51 7.521±2.80 4.547±0.00
ENSG00000214070 ENST00000424794 N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026355 ENSMUST00000027601 8.565±7.36 5.113±0.47 6.828±1.48 12.848±8.31 7.518±1.62 6.366±1.04 1.473±0.10 3.976±1.08 44.416±48.44 5.214±0.58 0.586±0.17 13.687±5.05 29.634±16.36 4.394±0.72
ENSMUST00000188755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190495 0.394±0.05 N/A 0.690±0.12 1.975±0.00 1.421±0.19 0.837±0.26 0.268±0.11 0.340±0.00 0.199±0.06 0.776±0.16 0.105±0.03 1.853±0.41 0.445±0.00 0.440±0.10
ENSMUST00000191454 N/A N/A N/A 2.102±0.00 N/A N/A N/A N/A N/A N/A N/A 28.898±0.00 29.109±20.00 N/A
ENSMUSG00000026356 ENSMUST00000027602 17.201±3.16 6.604±1.13 22.085±2.42 15.207±5.41 11.321±1.51 5.568±0.96 12.350±0.98 16.440±1.16 26.892±13.36 11.632±1.26 21.575±1.27 12.479±6.92 27.538±11.08 16.176±5.09
ENSMUST00000064309 N/A 13.533±6.11 N/A N/A N/A 5.604±1.18 N/A N/A N/A 5.520±0.00 N/A 7.949±2.17 N/A N/A
ENSMUST00000186398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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