C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence C78339
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099547 C78339-001 ENSMUSG00000069237 10090 + 13:46669522-46678056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099547 15.748±1.23 19.511±9.41 24.451±0.68 19.530±7.92 10.252±3.85 12.691±8.27 5.762±0.24 12.989±1.62 8.996±2.22 15.131±3.57 7.282±1.18 12.069±8.40 12.162±3.64 11.545±5.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C9 CIL_0009C9_0002 VISTA 13:46271320-46874349
CIL_0008JF CIL_0008JF_0002 VISTA 13:46271337-46874342
CIL_0008B7 CIL_0008B7_0002 VISTA 13:46332291-46935792
CIL_00081D CIL_00081D_0002 VISTA 13:46435395-47036634
CIL_0003RP CIL_0003RP_0002 CGP 13:46501848-46678056
CIL_00090E CIL_00090E_0002 VISTA 13:46584783-47186478
CIL_0003RM CIL_0003RM_0002 CGP 13:46669522-46727940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259963 FAM8A1-001 protein_coding Homo_sapiens 0 1138
ENST00000407496 FAM8A6P-001 processed_pseudogene Homo_sapiens 0 641
ENST00000427218 FAM8A3P-001 processed_pseudogene Homo_sapiens 0 654
ENST00000433558 FAM8A5P-001 processed_pseudogene Homo_sapiens 0 645
ENST00000435433 FAM8A4P-001 processed_pseudogene Homo_sapiens 0 634
ENST00000438040 FAM8A5P-001 processed_pseudogene Homo_sapiens 0 664
ENST00000447076 FAM8A5P-001 processed_pseudogene Homo_sapiens 0 652
ENST00000528813 FAM8A2P-001 unprocessed_pseudogene Homo_sapiens 0 520

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