C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003UT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000025772-ENSG00000101109 CGP 9606 20:44942130-45079959
GeneTranscriptPositionBiotype
ENSG00000025772 (TOMM34)
translocase of outer mitochondrial membrane 34 		ENST00000372813 (TOMM34-001) 44942130-44960486 protein_coding
ENSG00000101104 (PABPC1L)
poly(A) binding protein, cytoplasmic 1-like 		ENST00000217073 (PABPC1L-001) 44910144-44938748 protein_coding
ENST00000217074 (PABPC1L-017) 44910062-44930726 protein_coding
ENST00000217075 (PABPC1L-011) 44932682-44939317 protein_coding
ENST00000255136 (PABPC1L-201) 44910062-44939321 protein_coding
ENST00000372819 (PABPC1L-007) 44932179-44959035 protein_coding
ENST00000372822 (PABPC1L-005) 44935462-44939317 protein_coding
ENST00000372824 (PABPC1L-004) 44931562-44939317 protein_coding
ENST00000372826 (PABPC1L-009) 44933135-44958807 protein_coding
ENST00000465761 (PABPC1L-008) 44933043-44937187 processed_transcript
ENST00000474208 (PABPC1L-013) 44935397-44938696 processed_transcript
ENST00000476056 (PABPC1L-016) 44921625-44939317 processed_transcript
ENST00000479873 (PABPC1L-006) 44932690-44939317 nonsense_mediated_decay
ENST00000481196 (PABPC1L-002) 44918994-44930726 processed_transcript
ENST00000482486 (PABPC1L-015) 44937843-44939317 processed_transcript
ENST00000489068 (PABPC1L-014) 44935431-44939184 processed_transcript
ENST00000490798 (PABPC1L-010) 44921611-44959035 processed_transcript
ENST00000537323 (PABPC1L-202) 44910124-44939313 protein_coding
ENSG00000227477 (STK4-AS1)
STK4 antisense RNA 1 (head to head) 		ENST00000434401 (STK4-AS1-001) 44963794-44966402 lincRNA
ENST00000445571 (STK4-AS1-002) 44963800-44965617 lincRNA
ENSG00000252021 (Y_RNA)
Y RNA 		ENST00000516212 (Y_RNA.1-871) 45004348-45004454 misc_RNA
CIL_0003UT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018322-ENSMUSG00000018209 CGP 10090 2:164053540-164155524
GeneTranscriptPositionBiotype
ENSMUSG00000018209 (Stk4)
serine/threonine kinase 4 		ENSMUST00000018353 (Stk4-001) 164074138-164155524 protein_coding
ENSMUST00000088291 (Stk4-003) 164110201-164155524 protein_coding
ENSMUST00000134078 (Stk4-004) 164070322-164086591 protein_coding
ENSMUST00000137866 (Stk4-002) 164099720-164118369 protein_coding
ENSMUST00000153319 (Stk4-005) 164081597-164096857 processed_transcript
ENSMUSG00000018322 (Tomm34)
translocase of outer mitochondrial membrane 34 		ENSMUST00000018466 (Tomm34-002) 164053540-164071102 protein_coding
ENSMUST00000109384 (Tomm34-001) 164053540-164071169 protein_coding
ENSMUST00000132602 (Tomm34-003) 164053540-164065715 retained_intron
ENSMUSG00000085538 (Gm11455)
predicted gene 11455 		ENSMUST00000149285 (Gm11455-001) 164135703-164140419 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UT_0001ENSG00000025772ENST00000372813ENSG00000101104ENST00000217073ENST00000217074ENST00000217075ENST00000255136ENST00000372819ENST00000372822ENST00000372824ENST00000372826ENST00000465761ENST00000474208ENST00000476056ENST00000479873ENST00000481196ENST00000482486ENST00000489068ENST00000490798ENST00000537323ENSG00000227477ENST00000434401ENST00000445571ENSG00000252021ENST00000516212CIL_0003UT_0002ENSMUSG00000018209ENSMUST00000018353ENSMUST00000088291ENSMUST00000134078ENSMUST00000137866ENSMUST00000153319ENSMUSG00000018322ENSMUST00000018466ENSMUST00000109384ENSMUST00000132602ENSMUSG00000085538ENSMUST00000149285
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UT_0001ENSG00000025772ENST00000372813ENSG00000101104ENST00000217073ENST00000217074ENST00000372819ENST00000372824ENST00000465761ENST00000474208ENST00000479873ENST00000481196ENST00000482486ENST00000489068ENST00000490798ENSG00000227477ENST00000434401ENST00000445571ENSG00000252021ENST00000516212CIL_0003UT_0002ENSMUSG00000018209ENSMUST00000018353ENSMUST00000088291ENSMUST00000137866ENSMUSG00000018322ENSMUST00000018466ENSMUST00000109384ENSMUST00000132602ENSMUSG00000085538ENSMUST00000149285
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000025772 ENST00000372813 6.378±0.00 11.430±0.00 1.317±0.00 11.515±5.20 3.187±0.75 3.780±1.99 1.993±1.30 7.302±5.32 3.531±1.75 5.385±3.87 2.362±1.20 15.038±7.72 28.347±5.36 77.180±20.09
ENSG00000101104 ENST00000217073 N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000217074 0.342±0.00 2.175±0.00 1.386±0.00 N/A N/A 0.853±0.00 0.171±0.00 0.498±0.00 1.866±0.00 1.046±0.39 N/A 8.768±9.23 0.557±0.20 3.463±0.00
ENST00000217075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000255136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372819 N/A 0.544±0.00 N/A N/A 0.379±0.00 0.371±0.00 N/A N/A 0.206±0.00 N/A N/A N/A 0.320±0.00 1.093±0.00
ENST00000372822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372824 N/A 1.029±0.00 0.251±0.00 0.325±0.00 0.345±0.00 0.241±0.00 0.129±0.08 5.251±0.00 0.752±0.00 N/A N/A 13.409±10.59 0.314±0.12 2.946±0.00
ENST00000372826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465761 N/A N/A N/A N/A 0.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.505±0.00 N/A N/A N/A
ENST00000476056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A 0.453±0.02 N/A
ENST00000481196 N/A N/A 0.741±0.00 N/A N/A 1.034±0.00 0.102±0.00 0.424±0.00 1.199±0.00 N/A N/A N/A N/A N/A
ENST00000482486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A
ENST00000489068 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.863±0.00 N/A N/A N/A N/A
ENST00000490798 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A
ENST00000537323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227477 ENST00000434401 0.032±0.00 0.107±0.00 N/A 0.027±0.00 0.085±0.00 0.040±0.00 0.024±0.00 0.052±0.00 0.104±0.00 0.011±0.00 0.067±0.00 0.027±0.00 0.044±0.02 1.710±0.57
ENST00000445571 N/A N/A N/A N/A 0.143±0.00 0.045±0.00 N/A 0.391±0.35 N/A N/A N/A 0.321±0.00 0.145±0.09 6.145±0.00
ENSG00000252021 ENST00000516212 N/A 0.839±0.00 N/A 27.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018209 ENSMUST00000018353 3.374±0.80 1.106±0.34 6.259±0.09 7.650±1.23 8.065±1.31 4.217±0.99 2.328±0.25 3.923±0.95 5.463±2.71 12.225±2.50 2.171±0.40 4.952±2.44 14.160±3.68 5.445±0.18
ENSMUST00000088291 3.633±1.01 6.684±0.56 1.524±0.40 1.573±0.00 9.028±3.29 5.133±1.28 0.975±0.33 2.544±0.79 1.582±0.34 7.003±0.46 0.440±0.09 5.533±1.70 N/A 2.793±1.06
ENSMUST00000134078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137866 N/A N/A N/A 13.832±0.00 N/A N/A N/A N/A N/A N/A N/A 19.401±0.00 37.014±8.29 20.162±0.00
ENSMUST00000153319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000018322 ENSMUST00000018466 4.318±0.79 6.188±1.24 4.092±0.58 3.147±0.83 5.944±1.57 4.770±0.67 1.200±0.15 1.866±0.46 1.268±0.40 5.797±0.77 0.991±0.29 5.294±1.51 1.986±0.30 6.617±2.24
ENSMUST00000109384 18.478±0.52 36.982±1.85 14.904±0.16 10.955±3.63 21.146±5.19 11.539±5.63 10.147±2.58 14.223±1.25 6.584±3.21 15.439±5.24 4.069±0.58 22.527±8.29 12.210±3.56 14.463±4.83
ENSMUST00000132602 N/A N/A N/A 1.125±0.00 1.708±0.00 N/A N/A N/A N/A N/A N/A 3.007±0.00 N/A N/A
ENSMUSG00000085538 ENSMUST00000149285 0.142±0.10 0.155±0.01 0.050±0.02 0.088±0.03 0.336±0.26 0.132±0.00 N/A 0.060±0.00 0.088±0.04 0.249±0.04 N/A 0.351±0.33 0.092±0.03 0.099±0.04

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