C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000022254-ENSDARG00000076401 CGP 7955 3:35091026-35461274
GeneTranscriptPositionBiotype
ENSDARG00000022254 (prkcbb)
protein kinase C, beta b 		ENSDART00000029451 (prkcbb-001) 35091026-35335821 protein_coding
ENSDARG00000076401 (cacng3b)
calcium channel, voltage-dependent, gamma subunit 3b 		ENSDART00000110126 (cacng3b-001) 35383374-35461274 protein_coding
CIL_0003VA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166501-ENSG00000006116 CGP 9606 16:23836001-24362801
GeneTranscriptPositionBiotype
ENSG00000006116 (CACNG3)
calcium channel, voltage-dependent, gamma subunit 3 		ENST00000005284 (CACNG3-001) 24255553-24362801 protein_coding
ENSG00000166501 (PRKCB)
protein kinase C, beta 		ENST00000303531 (PRKCB-002) 23836024-24220611 protein_coding
ENST00000321728 (PRKCB-001) 23836001-24220611 protein_coding
ENST00000463752 (PRKCB-008) 24172176-24174930 retained_intron
ENST00000466124 (PRKCB-010) 24185531-24191588 protein_coding
ENST00000472066 (PRKCB-007) 24151685-24180845 protein_coding
ENST00000482000 (PRKCB-006) 24092790-24111321 processed_transcript
ENST00000486868 (PRKCB-005) 24031980-24092860 retained_intron
ENST00000487674 (PRKCB-009) 24174216-24185567 retained_intron
ENST00000498058 (PRKCB-003) 23836082-23869326 protein_coding
ENST00000498739 (PRKCB-004) 23837223-24113065 protein_coding
ENSG00000260264 (AC004125.3)
 ENST00000567127 (AC004125.3-001) 24236104-24252863 lincRNA
ENST00000567624 (AC004125.3-002) 24237982-24247545 lincRNA
ENSG00000279202 (CTA-113A6.1)
 ENST00000624179 (CTA-113A6.1-001) 24098239-24099971 TEC
ENSG00000279276 (CTA-345G4.1)
 ENST00000622948 (CTA-345G4.1-001) 23962951-23963351 TEC
ENSG00000279554 (CTA-113A6.2)
 ENST00000624082 (CTA-113A6.2-001) 24208105-24208478 TEC
CIL_0003VA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052889-ENSMUSG00000066189 CGP 10090 7:122288751-122769393
GeneTranscriptPositionBiotype
ENSMUSG00000052889 (Prkcb)
protein kinase C, beta 		ENSMUST00000064921 (Prkcb-003) 122289309-122634402 protein_coding
ENSMUST00000064989 (Prkcb-001) 122289297-122628655 protein_coding
ENSMUST00000127910 (Prkcb-006) 122599982-122628078 processed_transcript
ENSMUST00000131167 (Prkcb-004) 122290028-122425041 processed_transcript
ENSMUST00000143692 (Prkcb-002) 122288751-122634399 nonsense_mediated_decay
ENSMUST00000149583 (Prkcb-005) 122416068-122457326 processed_transcript
ENSMUSG00000066189 (Cacng3)
calcium channel, voltage-dependent, gamma subunit 3 		ENSMUST00000084615 (Cacng3-001) 122670492-122769393 protein_coding
ENSMUST00000182095 (Cacng3-003) 122671418-122768540 protein_coding
ENSMUST00000182563 (Cacng3-002) 122671391-122768421 protein_coding
ENSMUSG00000082803 (Gm14423)
predicted gene 14423 		ENSMUST00000121335 (Gm14423-001) 122550435-122550555 processed_pseudogene
ENSMUSG00000083132 (Gm14422)
predicted gene 14422 		ENSMUST00000120986 (Gm14422-001) 122612228-122612378 processed_pseudogene
ENSMUSG00000084230 (Gm14388)
predicted gene 14388 		ENSMUST00000118119 (Gm14388-001) 122442023-122442499 processed_pseudogene
ENSMUSG00000087520 (Gm14389)
predicted gene 14389 		ENSMUST00000140453 (Gm14389-001) 122484195-122484420 processed_pseudogene
ENSMUSG00000088299 (Gm26414)
predicted gene, 26414 		ENSMUST00000157674 (Gm26414-201) 122446858-122447126 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VA_0001ENSDARG00000022254ENSDART00000029451ENSDARG00000076401ENSDART00000110126CIL_0003VA_0002ENSG00000006116ENST00000005284ENSG00000166501ENST00000303531ENST00000321728ENST00000463752ENST00000466124ENST00000472066ENST00000482000ENST00000486868ENST00000487674ENST00000498058ENST00000498739ENSG00000260264ENST00000567127ENST00000567624ENSG00000279202ENST00000624179ENSG00000279276ENST00000622948ENSG00000279554ENST00000624082CIL_0003VA_0003ENSMUSG00000052889ENSMUST00000064921ENSMUST00000064989ENSMUST00000127910ENSMUST00000131167ENSMUST00000143692ENSMUST00000149583ENSMUSG00000066189ENSMUST00000084615ENSMUST00000182095ENSMUST00000182563ENSMUSG00000082803ENSMUST00000121335ENSMUSG00000083132ENSMUST00000120986ENSMUSG00000084230ENSMUST00000118119ENSMUSG00000087520ENSMUST00000140453ENSMUSG00000088299ENSMUST00000157674
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VA_0001ENSDARG00000022254ENSDART00000029451ENSDARG00000076401ENSDART00000110126CIL_0003VA_0002ENSG00000006116ENST00000005284ENSG00000166501ENST00000303531ENST00000321728ENST00000482000ENST00000498739ENSG00000260264ENST00000567127ENST00000567624ENSG00000279202ENST00000624179ENSG00000279276ENST00000622948ENSG00000279554ENST00000624082CIL_0003VA_0003ENSMUSG00000052889ENSMUST00000064921ENSMUST00000064989ENSMUST00000127910ENSMUST00000143692ENSMUSG00000066189ENSMUST00000084615ENSMUST00000182095ENSMUST00000182563ENSMUSG00000082803ENSMUST00000121335ENSMUSG00000083132ENSMUST00000120986ENSMUSG00000084230ENSMUST00000118119ENSMUSG00000087520ENSMUST00000140453ENSMUSG00000088299ENSMUST00000157674
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022254 ENSDART00000029451 N/A N/A N/A 28.561±15.73 N/A N/A 2.194±0.46 11.099±2.57 0.099±0.00 N/A 1.834±0.00 N/A N/A N/A
ENSDARG00000076401 ENSDART00000110126 N/A N/A N/A 7.522±3.90 N/A N/A 0.013±0.00 0.142±0.09 N/A N/A 0.554±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006116 ENST00000005284 N/A N/A 0.019±0.00 13.771±2.46 N/A N/A 0.006±0.00 N/A 0.041±0.00 N/A N/A N/A N/A 0.160±0.00
ENSG00000166501 ENST00000303531 0.845±0.00 9.928±0.00 N/A 26.895±0.01 0.885±0.59 3.255±0.00 0.120±0.00 0.439±0.00 1.518±1.04 2.661±0.47 N/A 0.431±0.12 0.703±0.04 1.833±0.79
ENST00000321728 0.525±0.00 N/A N/A 20.012±1.15 N/A N/A 0.376±0.00 N/A 0.328±0.00 2.977±0.53 0.083±0.01 0.372±0.03 0.742±0.13 2.985±0.00
ENST00000463752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482000 N/A N/A N/A N/A N/A N/A N/A 2.056±0.00 N/A N/A N/A N/A N/A N/A
ENST00000486868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.782±0.00 N/A
ENSG00000260264 ENST00000567127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.735±0.14
ENST00000567624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00
ENSG00000279202 ENST00000624179 0.045±0.00 0.394±0.00 N/A 0.165±0.00 0.160±0.06 0.103±0.03 0.082±0.07 0.057±0.00 0.022±0.00 0.143±0.13 0.017±0.00 0.034±0.00 N/A 0.028±0.01
ENSG00000279276 ENST00000622948 N/A 0.541±0.00 N/A 0.035±0.00 1.054±0.00 N/A 0.031±0.00 N/A N/A 0.359±0.00 N/A N/A N/A 0.062±0.00
ENSG00000279554 ENST00000624082 N/A 0.334±0.00 N/A 0.545±0.45 N/A N/A N/A N/A 0.459±0.00 0.115±0.00 N/A 0.102±0.00 N/A 0.052±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052889 ENSMUST00000064921 N/A 1.204±0.50 24.328±4.82 8.181±1.29 4.686±0.00 N/A 0.347±0.14 0.455±0.13 0.665±0.68 1.077±0.00 0.183±0.25 1.239±0.69 0.256±0.19 0.407±0.26
ENSMUST00000064989 2.172±0.99 1.205±0.30 N/A 70.304±0.00 9.569±3.30 0.860±0.37 0.531±0.17 0.704±0.24 0.322±0.22 2.621±0.39 0.023±0.01 1.425±0.23 0.189±0.25 1.000±0.14
ENSMUST00000127910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.03 N/A
ENSMUST00000131167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143692 0.840±0.00 0.773±0.35 N/A N/A 5.446±0.52 1.253±0.38 0.121±0.00 0.118±0.07 0.159±0.07 0.552±0.11 N/A 1.846±0.26 0.086±0.00 0.175±0.03
ENSMUST00000149583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000066189 ENSMUST00000084615 N/A 0.154±0.02 0.009±0.00 5.630±4.45 0.035±0.02 0.024±0.01 N/A 0.024±0.00 0.015±0.00 N/A 0.025±0.00 0.033±0.00 0.059±0.06 0.009±0.00
ENSMUST00000182095 N/A N/A 0.004±0.00 54.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182563 N/A N/A N/A 30.312±0.00 0.027±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082803 ENSMUST00000121335 1667.920±0.00 1169.400±46.43 N/A 41.550±33.50 1330.850±85.32 1589.610±0.00 N/A N/A 932.992±923.16 N/A N/A N/A 14.309±0.00 1499.771±1380.34
ENSMUSG00000083132 ENSMUST00000120986 674.375±21.30 197.318±0.00 5.086±0.00 4.598±0.05 455.372±0.00 N/A 288.328±0.00 311.025±121.07 76.454±74.12 N/A N/A 14.788±0.00 N/A 309.269±59.78
ENSMUSG00000084230 ENSMUST00000118119 0.221±0.10 N/A N/A 0.034±0.00 N/A 0.347±0.11 N/A 0.119±0.01 0.132±0.10 N/A N/A 1.134±0.00 0.153±0.00 0.160±0.05
ENSMUSG00000087520 ENSMUST00000140453 N/A N/A N/A N/A 1.315±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088299 ENSMUST00000157674 N/A N/A N/A 0.602±0.00 0.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading