C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196900-ENSG00000113368 CGP 9606 5:126631722-126837020
GeneTranscriptPositionBiotype
ENSG00000113368 (LMNB1)
lamin B1 		ENST00000261366 (LMNB1-001) 126777148-126837020 protein_coding
ENST00000395354 (LMNB1-003) 126777189-126819234 protein_coding
ENST00000460265 (LMNB1-002) 126776623-126837014 processed_transcript
ENST00000463908 (LMNB1-006) 126777379-126810255 processed_transcript
ENST00000472034 (LMNB1-004) 126777161-126818979 processed_transcript
ENST00000492190 (LMNB1-005) 126777161-126804914 processed_transcript
ENST00000494185 (LMNB1-007) 126811713-126821081 retained_intron
ENST00000504788 (LMNB1-009) 126777153-126836571 processed_transcript
ENST00000512460 (LMNB1-011) 126818928-126826109 retained_intron
ENSG00000196900 (TEX43)
testis expressed 43 		ENST00000357147 (TEX43-001) 126631722-126636287 protein_coding
ENST00000506701 (TEX43-002) 126632534-126636242 retained_intron
ENSG00000213630 (RP11-772E11.1)
 ENST00000505182 (RP11-772E11.1-001) 126663337-126663568 processed_pseudogene
ENSG00000249768 (HSPE1P10)
heat shock 10kDa protein 1 pseudogene 10 		ENST00000508631 (HSPE1P10-001) 126737438-126737995 processed_pseudogene
ENSG00000251072 (RP11-434D11.4)
 ENST00000509185 (RP11-434D11.4-001) 126751963-126776486 lincRNA
ENSG00000252185 (RNU6-752P)
RNA, U6 small nuclear 752, pseudogene 		ENST00000516376 (RNU6-752P-201) 126755316-126755417 snRNA
CIL_00041Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032900-ENSMUSG00000024590 CGP 10090 18:56588350-56753424
GeneTranscriptPositionBiotype
ENSMUSG00000024590 (Lmnb1)
lamin B1 		ENSMUST00000025486 (Lmnb1-001) 56707813-56753424 protein_coding
ENSMUST00000128651 (Lmnb1-002) 56728441-56733456 retained_intron
ENSMUSG00000032900 (Tex43)
testis expressed 43 		ENSMUST00000035640 (Tex43-001) 56588350-56594782 protein_coding
ENSMUST00000127591 (Tex43-002) 56588379-56592714 protein_coding
ENSMUST00000147775 (Tex43-004) 56588426-56594782 protein_coding
ENSMUST00000153248 (Tex43-003) 56588389-56594712 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041Q_0001ENSG00000113368ENST00000261366ENST00000395354ENST00000460265ENST00000463908ENST00000472034ENST00000492190ENST00000494185ENST00000504788ENST00000512460ENSG00000196900ENST00000357147ENST00000506701ENSG00000213630ENST00000505182ENSG00000249768ENST00000508631ENSG00000251072ENST00000509185ENSG00000252185ENST00000516376CIL_00041Q_0002ENSMUSG00000024590ENSMUST00000025486ENSMUST00000128651ENSMUSG00000032900ENSMUST00000035640ENSMUST00000127591ENSMUST00000147775ENSMUST00000153248
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041Q_0001ENSG00000113368ENST00000261366ENST00000395354ENST00000460265ENST00000463908ENST00000472034ENST00000492190ENST00000494185ENST00000504788ENST00000512460ENSG00000196900ENST00000357147ENST00000506701ENSG00000213630ENST00000505182ENSG00000249768ENST00000508631ENSG00000251072ENST00000509185ENSG00000252185ENST00000516376CIL_00041Q_0002ENSMUSG00000024590ENSMUST00000025486ENSMUST00000128651ENSMUSG00000032900ENSMUST00000035640ENSMUST00000127591ENSMUST00000147775
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113368 ENST00000261366 1.274±0.00 3.110±0.00 0.235±0.00 0.793±0.68 1.366±0.03 3.706±1.20 0.492±0.00 0.528±0.00 1.356±0.00 2.749±2.35 N/A 4.414±3.65 6.594±2.68 2.181±0.00
ENST00000395354 N/A N/A N/A N/A 1.082±0.00 N/A N/A 0.481±0.00 N/A N/A 0.337±0.00 1.732±0.00 N/A N/A
ENST00000460265 N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A 1.220±0.00 N/A N/A
ENST00000463908 N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A 2.322±0.00 1.581±0.00 N/A N/A N/A N/A
ENST00000472034 N/A N/A 0.421±0.00 N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492190 N/A N/A 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494185 N/A N/A N/A N/A N/A N/A 0.257±0.00 1.247±0.00 N/A N/A 0.688±0.00 N/A N/A 8.084±0.00
ENST00000504788 1.310±0.00 2.680±0.00 N/A 0.731±0.06 3.702±0.00 2.648±2.06 0.081±0.00 0.819±0.00 N/A 1.752±0.49 0.096±0.00 5.061±2.92 3.187±2.50 3.751±0.26
ENST00000512460 N/A 3.472±0.00 0.445±0.00 2.040±0.00 N/A N/A N/A N/A 0.877±0.00 N/A N/A 20.282±0.00 18.285±0.00 8.837±1.90
ENSG00000196900 ENST00000357147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.441±1.64
ENST00000506701 N/A 0.202±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.158±0.00
ENSG00000213630 ENST00000505182 N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A 0.054±0.00 N/A 0.833±0.47 N/A N/A
ENSG00000249768 ENST00000508631 0.254±0.00 0.569±0.00 N/A 0.366±0.00 0.279±0.00 0.051±0.00 0.055±0.00 0.144±0.00 0.741±0.72 0.128±0.00 N/A 0.050±0.01 N/A 0.132±0.00
ENSG00000251072 ENST00000509185 N/A N/A N/A 0.037±0.00 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.16
ENSG00000252185 ENST00000516376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.205±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024590 ENSMUST00000025486 3.379±2.28 1.715±0.36 4.695±0.36 27.412±17.86 3.364±2.19 4.643±0.98 0.448±0.25 0.947±0.36 15.772±17.80 2.449±0.72 2.129±0.27 15.411±7.08 41.696±30.09 3.329±0.37
ENSMUST00000128651 N/A N/A N/A 8.668±0.00 N/A N/A N/A N/A N/A N/A N/A 80.034±0.00 194.823±165.20 26.795±0.00
ENSMUSG00000032900 ENSMUST00000035640 N/A N/A N/A 0.048±0.03 N/A N/A 0.091±0.00 N/A 0.015±0.00 N/A N/A N/A 0.076±0.06 95.872±37.69
ENSMUST00000127591 N/A N/A N/A 0.097±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.03 N/A
ENSMUST00000147775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.371±0.00 25.237±0.31
ENSMUST00000153248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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