C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025486 Lmnb1-001 ENSMUSG00000024590 10090 + 18:56707813-56753424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025486 3.379±2.28 1.715±0.36 4.695±0.36 27.412±17.86 3.364±2.19 4.643±0.98 0.448±0.25 0.947±0.36 15.772±17.80 2.449±0.72 2.129±0.27 15.411±7.08 41.696±30.09 3.329±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041Q CIL_00041Q_0002 CGP 18:56588350-56753424
CIL_0007S2 CIL_0007S2_0002 VISTA 18:56596918-57198991
CIL_00041J CIL_00041J_0002 CGP 18:56707813-56925548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005638 IDA lamin filament
GO:0005654 IDA nucleoplasm
GO:0008432 NAS JUN kinase binding
GO:0016020 IEA membrane
GO:0031662 NAS positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M transition of mitotic cell cycle
GO:0031965 IEA nuclear membrane
GO:0043274 IPI phospholipase binding
GO:0046330 NAS positive regulation of JNK cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261366 LMNB1-001 protein_coding Homo_sapiens 0 2558
ENST00000325327 LMNB2-001 protein_coding Homo_sapiens 8e-35 154
ENST00000395354 LMNB1-003 protein_coding Homo_sapiens 0 1408
ENST00000460265 LMNB1-002 processed_transcript Homo_sapiens 0 1378
ENST00000463908 LMNB1-006 processed_transcript Homo_sapiens 0 686
ENST00000472034 LMNB1-004 processed_transcript Homo_sapiens 0 741
ENST00000490554 LMNB2-003 retained_intron Homo_sapiens 1e-35 154
ENST00000492190 LMNB1-005 processed_transcript Homo_sapiens 0 658
ENST00000504788 LMNB1-009 processed_transcript Homo_sapiens 0 1866
ENST00000512460 LMNB1-011 retained_intron Homo_sapiens 0 795
ENST00000527409 LMNB2-006 processed_transcript Homo_sapiens 4e-31 139

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