C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261366 LMNB1-001 ENSG00000113368 9606 + 5:126777148-126837020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000261366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000261366 1.274±0.00 3.110±0.00 0.235±0.00 0.793±0.68 1.366±0.03 3.706±1.20 0.492±0.00 0.528±0.00 1.356±0.00 2.749±2.35 4.414±3.65 6.594±2.68 2.181±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041Q CIL_00041Q_0001 CGP 5:126631722-126837020
CIL_0007S2 CIL_0007S2_0001 VISTA 5:126699007-127301374
CIL_00041J CIL_00041J_0001 CGP 5:126776623-127030808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005634 IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005638 IEA lamin filament
GO:0005654 TAS nucleoplasm
GO:0005882 IEA intermediate filament
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0016020 IDA membrane
GO:0031965 IDA nuclear membrane
GO:0043274 IEA phospholipase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025486 Lmnb1-001 protein_coding Mus_musculus 0 2558
ENSMUST00000128651 Lmnb1-002 retained_intron Mus_musculus 0 627

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