C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00044W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075682-ENSDARG00000076348 CGP 7955 7:44541817-44587973
GeneTranscriptPositionBiotype
ENSDARG00000008224 (vps35)
vacuolar protein sorting 35 (yeast) 		ENSDART00000016105 (vps35-001) 44487091-44541982 protein_coding
ENSDART00000111590 (vps35-201) 44443549-44541772 protein_coding
ENSDART00000138800 (vps35-002) 44534713-44541982 protein_coding
ENSDARG00000075682 (orc6)
origin recognition complex, subunit 6 		ENSDART00000113732 (orc6-001) 44541817-44550988 protein_coding
ENSDARG00000076348 (mylk3)
myosin light chain kinase 3 		ENSDART00000109918 (mylk3-201) 44551781-44587916 protein_coding
ENSDART00000142981 (mylk3-001) 44551955-44587973 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00044W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091651-ENSG00000140795 CGP 9606 16:46689643-46790407
GeneTranscriptPositionBiotype
ENSG00000091651 (ORC6)
origin recognition complex, subunit 6 		ENST00000219097 (ORC6-001) 46689646-46698394 protein_coding
ENST00000563306 (ORC6-003) 46689682-46696219 retained_intron
ENST00000563599 (ORC6-004) 46689643-46697511 nonsense_mediated_decay
ENST00000566860 (ORC6-005) 46690786-46698385 protein_coding
ENST00000567000 (ORC6-007) 46695109-46698382 retained_intron
ENST00000568364 (ORC6-006) 46689697-46697818 protein_coding
ENST00000569239 (ORC6-002) 46689659-46694519 retained_intron
ENST00000570260 (ORC6-008) 46689707-46695051 processed_transcript
ENST00000575571 (ORC6-009) 46694937-46697898 processed_transcript
ENSG00000140795 (MYLK3)
myosin light chain kinase 3 		ENST00000394809 (MYLK3-001) 46706979-46748309 protein_coding
ENST00000536476 (MYLK3-003) 46707666-46763246 protein_coding
ENST00000562104 (MYLK3-006) 46707692-46711790 processed_transcript
ENST00000564731 (MYLK3-002) 46725776-46738137 retained_intron
ENST00000565182 (MYLK3-007) 46707668-46710987 retained_intron
ENST00000569810 (MYLK3-004) 46738038-46790407 processed_transcript
ENST00000569844 (MYLK3-005) 46727238-46729937 retained_intron
ENSG00000260782 (RP11-480G7.2)
 ENST00000566331 (RP11-480G7.2-001) 46789898-46792040 processed_pseudogene
ENSG00000261788 (RP11-480G7.1)
 ENST00000562218 (RP11-480G7.1-001) 46703369-46704025 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00044W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031697-ENSMUSG00000031698 CGP 10090 8:85299632-85386345
GeneTranscriptPositionBiotype
ENSMUSG00000031697 (Orc6)
origin recognition complex, subunit 6 		ENSMUST00000034132 (Orc6-201) 85299632-85308278 protein_coding
ENSMUST00000170141 (Orc6-202) 85299632-85308278 protein_coding
ENSMUSG00000031698 (Mylk3)
myosin light chain kinase 3 		ENSMUST00000034133 (Mylk3-001) 85324303-85365324 protein_coding
ENSMUST00000121972 (Mylk3-002) 85327053-85365347 protein_coding
ENSMUST00000122452 (Mylk3-003) 85324447-85380978 protein_coding
ENSMUST00000137290 (Mylk3-005) 85359248-85386345 protein_coding
ENSMUST00000138825 (Mylk3-004) 85360425-85381034 retained_intron
ENSMUSG00000084895 (AA672651)
expressed sequence AA672651 		ENSMUST00000151550 (AA672651-001) 85339343-85340272 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00044W_0001ENSDARG00000008224ENSDART00000016105ENSDART00000111590ENSDART00000138800ENSDARG00000075682ENSDART00000113732ENSDARG00000076348ENSDART00000109918ENSDART00000142981CIL_00044W_0002ENSG00000091651ENST00000219097ENST00000563306ENST00000563599ENST00000566860ENST00000567000ENST00000568364ENST00000569239ENST00000570260ENST00000575571ENSG00000140795ENST00000394809ENST00000536476ENST00000562104ENST00000564731ENST00000565182ENST00000569810ENST00000569844ENSG00000260782ENST00000566331ENSG00000261788ENST00000562218CIL_00044W_0003ENSMUSG00000031697ENSMUST00000034132ENSMUST00000170141ENSMUSG00000031698ENSMUST00000034133ENSMUST00000121972ENSMUST00000122452ENSMUST00000137290ENSMUST00000138825ENSMUSG00000084895ENSMUST00000151550
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00044W_0001ENSDARG00000008224ENSDART00000016105ENSDART00000111590ENSDARG00000075682ENSDART00000113732ENSDARG00000076348ENSDART00000109918ENSDART00000142981CIL_00044W_0002ENSG00000091651ENST00000219097ENST00000563306ENST00000567000ENST00000568364ENST00000569239ENST00000575571ENSG00000140795ENST00000394809ENST00000536476ENST00000564731ENST00000569810ENST00000569844ENSG00000260782ENST00000566331ENSG00000261788ENST00000562218CIL_00044W_0003ENSMUSG00000031697ENSMUST00000034132ENSMUST00000170141ENSMUSG00000031698ENSMUST00000034133ENSMUST00000121972ENSMUST00000122452ENSMUST00000137290ENSMUST00000138825ENSMUSG00000084895ENSMUST00000151550
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008224 ENSDART00000016105 N/A N/A N/A 45.684±7.22 N/A N/A 17.254±10.30 8.881±4.72 0.595±0.00 N/A 10.873±0.00 N/A N/A N/A
ENSDART00000111590 N/A N/A N/A N/A N/A N/A 5.168±0.00 N/A 1.048±0.00 N/A N/A N/A N/A N/A
ENSDART00000138800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075682 ENSDART00000113732 N/A N/A N/A N/A N/A N/A 19.216±0.00 12.494±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000076348 ENSDART00000109918 N/A N/A N/A 0.325±0.00 N/A N/A 43.989±0.00 0.134±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000142981 N/A N/A N/A 0.107±0.06 N/A N/A N/A 0.131±0.00 0.042±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091651 ENST00000219097 0.247±0.00 0.245±0.00 N/A 0.583±0.21 0.315±0.00 0.224±0.00 0.239±0.11 N/A N/A 0.405±0.00 N/A 3.046±3.34 1.573±0.91 4.856±2.24
ENST00000563306 N/A N/A N/A N/A N/A 0.797±0.00 N/A N/A 0.092±0.00 N/A 0.073±0.00 0.766±0.64 N/A N/A
ENST00000563599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567000 0.089±0.00 0.326±0.00 N/A 0.770±0.00 0.954±0.00 0.266±0.00 N/A 0.092±0.00 0.158±0.00 N/A N/A 2.439±2.84 N/A 4.971±3.98
ENST00000568364 N/A 0.368±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.272±0.00
ENST00000569239 0.091±0.00 0.234±0.00 1.861±0.00 1.328±0.00 1.682±1.63 0.538±0.51 1.166±0.00 0.506±0.43 0.772±0.72 1.725±0.00 1.108±1.08 1.225±0.87 0.409±0.17 N/A
ENST00000570260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575571 N/A N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A 0.550±0.00 0.052±0.00 N/A N/A N/A
ENSG00000140795 ENST00000394809 N/A N/A N/A N/A N/A N/A 20.781±0.00 N/A N/A N/A N/A 0.099±0.01 0.211±0.20 0.335±0.00
ENST00000536476 N/A N/A 0.849±0.00 0.082±0.00 N/A 0.021±0.00 26.408±0.00 N/A N/A 0.055±0.00 8.496±6.57 N/A 0.045±0.00 N/A
ENST00000562104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564731 0.565±0.00 N/A N/A 0.825±0.00 0.365±0.32 0.715±0.00 N/A 0.226±0.00 0.097±0.00 0.375±0.00 N/A 0.316±0.23 0.027±0.00 1.528±0.71
ENST00000565182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A
ENST00000569844 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260782 ENST00000566331 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSG00000261788 ENST00000562218 0.110±0.00 0.161±0.00 0.473±0.00 0.571±0.12 0.626±0.01 0.107±0.00 49.392±0.00 1.486±0.00 N/A 0.192±0.10 14.431±6.82 0.259±0.13 0.826±0.36 6.950±2.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031697 ENSMUST00000034132 5.642±1.39 2.207±0.32 7.753±1.44 10.704±4.84 3.921±0.61 2.419±1.13 1.230±0.53 2.978±0.47 17.809±19.23 4.746±0.61 1.353±0.30 5.924±1.52 27.001±11.30 5.240±1.44
ENSMUST00000170141 N/A N/A N/A 2.785±0.76 3.587±0.00 N/A 0.520±0.00 0.446±0.00 5.894±0.42 N/A 0.473±0.26 2.873±0.37 5.227±0.71 1.143±0.36
ENSMUSG00000031698 ENSMUST00000034133 0.068±0.00 N/A N/A 0.006±0.00 0.052±0.03 N/A 43.965±13.27 0.084±0.02 2.147±0.84 0.667±0.15 0.080±0.00 N/A 0.904±0.71 0.040±0.00
ENSMUST00000121972 N/A N/A N/A 0.029±0.00 0.184±0.06 0.091±0.03 31.216±11.49 0.117±0.00 0.111±0.05 0.681±0.00 0.065±0.00 0.330±0.16 0.231±0.00 0.373±0.00
ENSMUST00000122452 0.070±0.03 0.116±0.04 0.064±0.01 0.023±0.01 0.064±0.03 0.052±0.02 27.810±0.00 0.306±0.10 9.438±6.26 1.023±0.16 0.061±0.04 0.485±0.21 1.026±0.57 0.278±0.18
ENSMUST00000137290 N/A N/A N/A 1.011±0.00 N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A N/A
ENSMUST00000138825 N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.01 N/A N/A 1.806±0.62 N/A N/A
ENSMUSG00000084895 ENSMUST00000151550 N/A N/A N/A N/A N/A N/A 5.591±1.75 N/A 0.282±0.24 0.380±0.16 N/A 0.590±0.00 0.027±0.00 N/A

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