C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258455 MRPS9-001 ENSG00000135972 9606 + 2:105037983-105099960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258455 5.568±0.00 10.005±0.00 3.384±0.00 7.539±1.12 4.819±3.19 6.377±4.23 13.592±6.87 9.394±4.86 5.608±1.52 3.658±0.72 13.215±8.60 16.973±11.53 8.492±3.27 21.515±5.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JQ CIL_0007JQ_0001 UCNEbase 2:102922366-105081592
CIL_0008O2 CIL_0008O2_0001 VISTA 2:104536515-105137711
CIL_0008KZ CIL_0008KZ_0001 VISTA 2:104548528-105151080
CIL_000902 CIL_000902_0001 VISTA 2:104600279-105202032
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700
CIL_0004II CIL_0004II_0002 CGP 2:104855511-105099960
CIL_0003Y2 CIL_0003Y2_0001 CGP 2:105037983-105243049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005763 NAS mitochondrial small ribosomal subunit
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0042769 NAS DNA damage response, detection of DNA damage
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057208 Mrps9-002 protein_coding Mus_musculus 0 907
ENSMUST00000185523 Mrps9-001 processed_transcript Mus_musculus 0 640
ENSMUST00000187414 Mrps9-008 retained_intron Mus_musculus 0 590
ENSMUST00000185376 Mrps9-003 processed_transcript Mus_musculus 0 468

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