C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004LL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125779-ENSG00000101236 CGP 9606 20:3888839-4015582
GeneTranscriptPositionBiotype
ENSG00000101236 (RNF24)
ring finger protein 24 		ENST00000336095 (RNF24-001) 3927309-4015389 protein_coding
ENST00000358395 (RNF24-002) 3931421-4015582 protein_coding
ENST00000432261 (RNF24-201) 3931424-3974387 protein_coding
ENST00000545616 (RNF24-003) 3933567-4015545 protein_coding
ENSG00000125779 (PANK2)
pantothenate kinase 2 		ENST00000316562 (PANK2-007) 3889095-3923855 protein_coding
ENST00000336066 (PANK2-002) 3889389-3923855 nonsense_mediated_decay
ENST00000464452 (PANK2-005) 3908690-3917050 processed_transcript
ENST00000471830 (PANK2-004) 3891240-3910816 processed_transcript
ENST00000495692 (PANK2-003) 3888934-3918789 protein_coding
ENST00000497424 (PANK2-001) 3888839-3926958 protein_coding
ENST00000610179 (PANK2-008) 3889415-3923702 protein_coding
ENST00000619433 (PANK2-009) 3924818-3929873 processed_transcript
ENST00000621507 (PANK2-201) 3889816-3923855 protein_coding
ENST00000621891 (PANK2-010) 3929222-3929882 processed_transcript
ENSG00000199024 (MIR103A2)
microRNA 103a-2 		ENST00000362154 (MIR103A2-201) 3917494-3917571 miRNA
CIL_0004LL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037514-ENSMUSG00000048911 CGP 10090 2:131262495-131352892
GeneTranscriptPositionBiotype
ENSMUSG00000037514 (Pank2)
pantothenate kinase 2 		ENSMUST00000131779 (Pank2-002) 131262495-131283437 processed_transcript
ENSMUST00000138509 (Pank2-005) 131262839-131296691 processed_transcript
ENSMUST00000145904 (Pank2-007) 131262796-131296331 protein_coding
ENSMUST00000150843 (Pank2-001) 131262500-131299188 protein_coding
ENSMUST00000183349 (Pank2-008) 131274185-131296308 nonsense_mediated_decay
ENSMUST00000183388 (Pank2-006) 131274077-131293457 nonsense_mediated_decay
ENSMUST00000184105 (Pank2-003) 131262525-131296488 nonsense_mediated_decay
ENSMUST00000184932 (Pank2-004) 131262568-131299186 nonsense_mediated_decay
ENSMUSG00000048911 (Rnf24)
ring finger protein 24 		ENSMUST00000059372 (Rnf24-001) 131298064-131352881 protein_coding
ENSMUST00000110194 (Rnf24-003) 131298067-131328988 protein_coding
ENSMUST00000142982 (Rnf24-004) 131312557-131352892 retained_intron
ENSMUST00000165420 (Rnf24-201) 131298065-131313314 protein_coding
ENSMUST00000183902 (Rnf24-002) 131302646-131352862 nonsense_mediated_decay
ENSMUSG00000065563 (Mir103-2)
microRNA 103-2 		ENSMUST00000083629 (Mir103-2-201) 131288052-131288137 miRNA
ENSMUSG00000082044 (Gm14284)
predicted gene 14284 		ENSMUST00000121967 (Gm14284-001) 131322088-131322366 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LL_0001ENSG00000101236ENST00000336095ENST00000358395ENST00000432261ENST00000545616ENSG00000125779ENST00000316562ENST00000336066ENST00000464452ENST00000471830ENST00000495692ENST00000497424ENST00000610179ENST00000619433ENST00000621507ENST00000621891ENSG00000199024ENST00000362154CIL_0004LL_0002ENSMUSG00000037514ENSMUST00000131779ENSMUST00000138509ENSMUST00000145904ENSMUST00000150843ENSMUST00000183349ENSMUST00000183388ENSMUST00000184105ENSMUST00000184932ENSMUSG00000048911ENSMUST00000059372ENSMUST00000110194ENSMUST00000142982ENSMUST00000165420ENSMUST00000183902ENSMUSG00000065563ENSMUST00000083629ENSMUSG00000082044ENSMUST00000121967
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LL_0001ENSG00000101236ENST00000336095ENST00000545616ENSG00000125779ENST00000316562ENST00000336066ENST00000495692ENST00000497424ENST00000610179ENST00000621507ENSG00000199024ENST00000362154CIL_0004LL_0002ENSMUSG00000037514ENSMUST00000131779ENSMUST00000138509ENSMUST00000150843ENSMUST00000183349ENSMUST00000184105ENSMUST00000184932ENSMUSG00000048911ENSMUST00000059372ENSMUST00000110194ENSMUST00000165420ENSMUST00000183902ENSMUSG00000065563ENSMUST00000083629ENSMUSG00000082044ENSMUST00000121967
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101236 ENST00000336095 6.639±0.00 1.133±0.00 N/A 2.072±0.00 1.018±0.00 3.593±0.00 N/A 4.467±0.00 N/A 1.129±0.37 N/A 4.018±2.22 1.829±0.14 3.581±0.31
ENST00000358395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545616 N/A N/A N/A 9.017±0.00 N/A N/A N/A N/A N/A 4.273±0.00 0.319±0.00 4.931±0.00 N/A N/A
ENSG00000125779 ENST00000316562 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.291±0.00 N/A N/A N/A N/A
ENST00000336066 N/A N/A N/A 6.954±0.00 4.384±1.32 3.497±0.00 1.278±0.00 N/A 3.587±0.00 3.296±0.00 0.363±0.00 7.779±1.74 5.256±0.00 N/A
ENST00000464452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.931±0.00 N/A N/A 9.981±0.00
ENST00000497424 N/A N/A 0.634±0.00 3.233±0.00 1.420±0.44 0.693±0.00 1.052±0.00 1.415±1.00 N/A N/A N/A 2.666±0.82 N/A N/A
ENST00000610179 6.490±0.00 6.368±0.00 N/A 4.739±0.00 5.949±0.00 4.857±0.00 1.594±0.87 5.312±1.88 3.676±0.00 6.732±0.00 3.069±0.00 13.470±5.84 10.477±1.82 17.487±3.50
ENST00000619433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621507 N/A N/A N/A 4.381±0.00 2.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.262±0.00
ENST00000621891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199024 ENST00000362154 N/A 0.361±0.00 N/A 0.380±0.00 N/A N/A N/A N/A N/A N/A N/A 41.422±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037514 ENSMUST00000131779 N/A 14.493±4.51 N/A N/A 10.432±0.00 7.957±1.99 N/A N/A N/A N/A N/A 10.054±2.63 N/A N/A
ENSMUST00000138509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.622±0.56 7.492±0.00 4.255±0.00 N/A
ENSMUST00000145904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150843 N/A N/A 4.573±1.09 6.528±0.00 N/A 4.055±0.00 N/A N/A 2.613±1.88 N/A 1.580±0.67 5.462±1.08 3.857±0.00 5.132±1.39
ENSMUST00000183349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.064±0.00
ENSMUST00000183388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184105 N/A 5.312±0.54 N/A 11.281±0.00 6.870±0.12 6.714±0.00 N/A N/A 2.159±0.00 7.350±0.00 N/A 6.656±0.00 9.144±2.61 15.874±0.00
ENSMUST00000184932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A N/A N/A
ENSMUSG00000048911 ENSMUST00000059372 4.556±1.92 2.812±0.62 1.560±0.14 11.017±0.94 2.588±1.23 1.652±0.33 1.086±0.28 1.860±0.20 1.100±0.32 2.031±0.69 0.776±0.07 3.333±0.75 2.227±0.41 6.248±0.38
ENSMUST00000110194 N/A N/A N/A N/A N/A N/A N/A 5.323±1.39 N/A N/A N/A 2.122±0.00 N/A N/A
ENSMUST00000142982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165420 4.001±0.40 N/A 2.137±0.02 3.791±0.69 3.028±1.30 2.057±0.30 0.644±0.00 4.824±1.87 1.208±0.46 N/A 0.874±0.11 3.160±0.86 1.422±0.42 0.773±0.00
ENSMUST00000183902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.293±7.74
ENSMUSG00000065563 ENSMUST00000083629 N/A N/A N/A 98.709±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082044 ENSMUST00000121967 1.032±0.55 1.093±0.35 N/A 0.518±0.44 1.061±0.27 2.081±1.47 2.367±0.70 4.874±0.96 1.506±1.24 2.508±0.96 N/A 3.393±2.59 0.574±0.00 3.014±1.22

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