C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004LM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100227-ENSG00000100243 CGP 9606 22:42583721-42649568
GeneTranscriptPositionBiotype
ENSG00000100227 (POLDIP3)
polymerase (DNA-directed), delta interacting protein 3 		ENST00000252115 (POLDIP3-001) 42583721-42614962 protein_coding
ENST00000339677 (POLDIP3-201) 42584984-42614857 protein_coding
ENST00000348657 (POLDIP3-002) 42583721-42614931 protein_coding
ENST00000445215 (POLDIP3-003) 42583721-42614869 nonsense_mediated_decay
ENST00000451060 (POLDIP3-202) 42583722-42614962 protein_coding
ENST00000454057 (POLDIP3-005) 42597708-42614860 nonsense_mediated_decay
ENST00000463133 (POLDIP3-004) 42602768-42614877 processed_transcript
ENST00000491021 (POLDIP3-006) 42585887-42603012 processed_transcript
ENST00000617178 (POLDIP3-203) 42583722-42614911 protein_coding
ENSG00000100243 (CYB5R3)
cytochrome b5 reductase 3 		ENST00000352397 (CYB5R3-001) 42618808-42649568 protein_coding
ENST00000361740 (CYB5R3-201) 42617840-42644509 protein_coding
ENST00000402438 (CYB5R3-007) 42619744-42646960 protein_coding
ENST00000407332 (CYB5R3-003) 42618853-42636890 protein_coding
ENST00000407623 (CYB5R3-002) 42618842-42646977 protein_coding
ENST00000438270 (CYB5R3-006) 42627641-42647070 protein_coding
ENST00000466276 (CYB5R3-008) 42631041-42646679 retained_intron
ENST00000470741 (CYB5R3-005) 42618875-42633348 retained_intron
ENSG00000249222 (ATP5L2)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 		ENST00000505920 (ATP5L2-001) 42639803-42640601 protein_coding
ENSG00000270022 (RNU12)
RNA, U12 small nuclear 		ENST00000602478 (RNU12-001) 42615244-42615907 lincRNA
ENSG00000276027 (U12)
U12 minor spliceosomal RNA 		ENST00000362512 (U12.1-201) 42615244-42615393 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004LM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041815-ENSMUSG00000018042 CGP 10090 15:83125978-83172592
GeneTranscriptPositionBiotype
ENSMUSG00000018042 (Cyb5r3)
cytochrome b5 reductase 3 		ENSMUST00000018186 (Cyb5r3-001) 83153494-83172592 protein_coding
ENSMUST00000162178 (Cyb5r3-002) 83157064-83170506 protein_coding
ENSMUST00000162834 (Cyb5r3-003) 83160385-83170177 protein_coding
ENSMUSG00000041815 (Poldip3)
polymerase (DNA-directed), delta interacting protein 3 		ENSMUST00000058793 (Poldip3-001) 83125978-83149384 protein_coding
ENSMUST00000100375 (Poldip3-003) 83125978-83149331 protein_coding
ENSMUST00000129372 (Poldip3-005) 83133170-83149301 protein_coding
ENSMUST00000135013 (Poldip3-006) 83133265-83135911 retained_intron
ENSMUST00000149802 (Poldip3-002) 83135688-83149329 retained_intron
ENSMUST00000150926 (Poldip3-004) 83137828-83149336 retained_intron
ENSMUSG00000065176 (Rnu12)
RNA U12, small nuclear 		ENSMUST00000083242 (Rnu12-201) 83149644-83149794 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LM_0001ENSG00000100227ENST00000252115ENST00000339677ENST00000348657ENST00000445215ENST00000451060ENST00000454057ENST00000463133ENST00000491021ENST00000617178ENSG00000100243ENST00000352397ENST00000361740ENST00000402438ENST00000407332ENST00000407623ENST00000438270ENST00000466276ENST00000470741ENSG00000249222ENST00000505920ENSG00000270022ENST00000602478ENSG00000276027ENST00000362512CIL_0004LM_0002ENSMUSG00000018042ENSMUST00000018186ENSMUST00000162178ENSMUST00000162834ENSMUSG00000041815ENSMUST00000058793ENSMUST00000100375ENSMUST00000129372ENSMUST00000135013ENSMUST00000149802ENSMUST00000150926ENSMUSG00000065176ENSMUST00000083242
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LM_0001ENSG00000100227ENST00000252115ENST00000339677ENST00000348657ENST00000445215ENST00000451060ENST00000454057ENST00000463133ENST00000491021ENST00000617178ENSG00000100243ENST00000352397ENST00000402438ENST00000407332ENST00000438270ENSG00000249222ENST00000505920ENSG00000270022ENST00000602478ENSG00000276027ENST00000362512CIL_0004LM_0002ENSMUSG00000018042ENSMUST00000018186ENSMUST00000162834ENSMUSG00000041815ENSMUST00000058793ENSMUST00000100375ENSMUSG00000065176ENSMUST00000083242
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100227 ENST00000252115 12.625±0.00 7.119±0.00 1.759±0.00 6.905±6.10 8.551±7.14 12.144±0.00 5.343±4.10 24.955±0.00 5.854±2.68 11.891±6.08 13.111±0.00 28.552±25.37 19.841±9.15 15.967±6.07
ENST00000339677 N/A N/A N/A 3.505±0.00 N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000348657 N/A 5.217±0.00 N/A 1.497±0.00 N/A N/A N/A 2.112±0.00 N/A 8.328±0.00 2.315±0.00 13.727±0.00 6.651±3.28 5.351±0.00
ENST00000445215 N/A 1.900±0.00 N/A N/A N/A 8.750±0.00 N/A N/A N/A N/A 3.055±0.00 N/A N/A 8.070±0.00
ENST00000451060 N/A N/A 0.574±0.00 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454057 N/A N/A N/A N/A 3.111±0.00 N/A N/A N/A 3.584±0.00 N/A N/A 3.641±0.00 N/A N/A
ENST00000463133 N/A N/A 4.485±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.810±0.00
ENST00000617178 N/A N/A N/A 3.691±0.00 N/A 8.241±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100243 ENST00000352397 156.286±0.00 75.998±0.00 4.949±0.00 24.020±22.94 200.439±0.00 29.108±26.31 32.515±28.41 27.421±20.83 86.392±0.00 78.780±0.00 32.959±20.23 67.965±86.93 38.820±21.36 112.441±0.00
ENST00000361740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402438 N/A N/A 3.430±0.00 3.695±0.00 8.269±0.00 N/A 4.707±0.00 11.257±0.00 11.782±0.00 5.674±0.00 6.079±0.00 9.114±0.00 N/A N/A
ENST00000407332 N/A N/A 4.959±0.00 22.384±0.00 3.155±0.00 18.247±0.00 N/A 45.958±44.05 84.765±0.00 31.836±26.29 43.188±0.00 102.933±58.50 86.966±43.22 71.255±0.00
ENST00000407623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438270 N/A N/A N/A 5.147±0.00 N/A N/A 7.337±0.00 7.075±0.00 N/A N/A N/A 11.869±0.00 N/A N/A
ENST00000466276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249222 ENST00000505920 N/A 0.406±0.00 N/A 0.085±0.00 0.157±0.00 0.133±0.00 0.168±0.04 0.245±0.00 0.133±0.06 N/A N/A 0.081±0.04 N/A 0.090±0.04
ENSG00000270022 ENST00000602478 0.055±0.00 0.814±0.00 N/A N/A 0.854±0.55 N/A 0.847±0.74 0.226±0.00 2.212±2.16 0.124±0.00 0.175±0.00 0.181±0.05 N/A 0.641±0.02
ENSG00000276027 ENST00000362512 N/A N/A N/A 304.365±0.00 234.258±0.00 269.753±0.00 137.561±0.00 346.088±0.00 235.115±0.00 280.011±0.00 3.609±0.00 123.987±112.61 31.257±0.00 3.928±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018042 ENSMUST00000018186 72.236±21.07 172.287±83.92 47.049±0.92 11.136±6.46 42.124±15.27 37.644±4.86 15.480±3.65 44.735±7.71 67.459±30.75 71.463±5.80 4.529±0.82 64.259±34.91 38.394±12.90 13.295±6.42
ENSMUST00000162178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.351±0.00 100.947±0.22 N/A
ENSMUSG00000041815 ENSMUST00000058793 31.934±8.07 30.839±3.86 25.465±2.49 20.569±8.17 23.853±7.77 31.607±0.80 7.656±0.64 21.653±0.90 16.818±2.88 27.683±1.34 3.906±0.63 41.927±11.94 43.406±12.50 9.831±4.16
ENSMUST00000100375 N/A 5.357±0.88 N/A 3.453±0.85 4.074±0.00 N/A 1.535±0.00 N/A 3.921±1.19 N/A 1.182±0.52 8.046±1.81 10.835±5.07 9.818±3.81
ENSMUST00000129372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065176 ENSMUST00000083242 N/A N/A 3.506±0.00 118.145±0.00 N/A 357.808±0.00 N/A 286.853±143.86 8.236±5.80 N/A N/A 57.078±0.00 928.812±893.76 171.680±116.43

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