C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173141-ENSG00000180776 CGP 9606 13:21176645-21459370
GeneTranscriptPositionBiotype
ENSG00000173141 (MRPL57)
mitochondrial ribosomal protein L57 		ENST00000309594 (MRPL57-001) 21176645-21179084 protein_coding
ENSG00000180776 (ZDHHC20)
zinc finger, DHHC-type containing 20 		ENST00000320220 (ZDHHC20-201) 21376487-21459248 protein_coding
ENST00000382466 (ZDHHC20-202) 21372573-21459369 protein_coding
ENST00000400590 (ZDHHC20-001) 21376124-21459370 protein_coding
ENST00000415724 (ZDHHC20-203) 21378701-21459369 protein_coding
ENST00000464055 (ZDHHC20-002) 21376347-21387557 processed_transcript
ENST00000477811 (ZDHHC20-003) 21376515-21390254 processed_transcript
ENST00000484277 (ZDHHC20-004) 21381434-21381994 processed_transcript
ENST00000494731 (ZDHHC20-006) 21376519-21421107 processed_transcript
ENST00000542645 (ZDHHC20-204) 21372573-21459370 protein_coding
ENSG00000215571 (GRK6P1)
G protein-coupled receptor kinase 6 pseudogene 1 		ENST00000400595 (GRK6P1-001) 21319156-21320866 processed_pseudogene
ENSG00000222747 (RNA5SP25)
RNA, 5S ribosomal pseudogene 25 		ENST00000410815 (RNA5SP25-201) 21369790-21369899 rRNA
ENSG00000224429 (LINC00539)
long intergenic non-protein coding RNA 539 		ENST00000411525 (LINC00539-002) 21325625-21348721 lincRNA
ENST00000423575 (LINC00539-003) 21323269-21344845 lincRNA
ENST00000434601 (LINC00539-004) 21303515-21348721 lincRNA
ENST00000608957 (LINC00539-001) 21311042-21348721 lincRNA
ENSG00000229137 (RP11-101P17.11)
 ENST00000453309 (RP11-101P17.11-001) 21287406-21294859 lincRNA
ENSG00000233325 (MIPEPP3)
mitochondrial intermediate peptidase pseudogene 3 		ENST00000412105 (MIPEPP3-001) 21298259-21306373 transcribed_unprocessed_pseudogene
ENST00000424756 (MIPEPP3-002) 21298139-21304555 processed_transcript
ENSG00000233405 (LINC01046)
long intergenic non-protein coding RNA 1046 		ENST00000443719 (LINC01046-001) 21234568-21235204 lincRNA
ENSG00000235076 (GAPDHP52)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 52 		ENST00000449535 (GAPDHP52-001) 21358373-21359314 processed_pseudogene
ENSG00000235438 (ESRRAP2)
estrogen-related receptor alpha pseudogene 2 		ENST00000418437 (ESRRAP2-001) 21260032-21261580 transcribed_processed_pseudogene
ENST00000427890 (ESRRAP2-002) 21260029-21293429 processed_transcript
ENST00000606337 (ESRRAP2-003) 21260015-21269085 processed_transcript
ENSG00000236953 (ZDHHC20-IT1)
ZDHHC20 intronic transcript 1 (non-protein coding) 		ENST00000417513 (ZDHHC20-IT1-001) 21376977-21377874 sense_intronic
ENSG00000277077 (RP11-101P17.15)
 ENST00000616818 (RP11-101P17.15-001) 21287634-21287828 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004MB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021967-ENSMUSG00000021969 CGP 10090 14:57826239-57890262
GeneTranscriptPositionBiotype
ENSMUSG00000021967 (Mrpl57)
mitochondrial ribosomal protein L53 		ENSMUST00000022538 (Mrpl57-201) 57826239-57828745 protein_coding
ENSMUSG00000021969 (Zdhhc20)
zinc finger, DHHC domain containing 20 		ENSMUST00000089473 (Zdhhc20-201) 57832702-57890262 protein_coding
ENSMUSG00000065374 (Gm22738)
predicted gene, 22738 		ENSMUST00000083440 (Gm22738-201) 57831063-57831209 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MB_0001ENSG00000173141ENST00000309594ENSG00000180776ENST00000320220ENST00000382466ENST00000400590ENST00000415724ENST00000464055ENST00000477811ENST00000484277ENST00000494731ENST00000542645ENSG00000215571ENST00000400595ENSG00000222747ENST00000410815ENSG00000224429ENST00000411525ENST00000423575ENST00000434601ENST00000608957ENSG00000229137ENST00000453309ENSG00000233325ENST00000412105ENST00000424756ENSG00000233405ENST00000443719ENSG00000235076ENST00000449535ENSG00000235438ENST00000418437ENST00000427890ENST00000606337ENSG00000236953ENST00000417513ENSG00000277077ENST00000616818CIL_0004MB_0002ENSMUSG00000021967ENSMUST00000022538ENSMUSG00000021969ENSMUST00000089473ENSMUSG00000065374ENSMUST00000083440
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MB_0001ENSG00000173141ENST00000309594ENSG00000180776ENST00000320220ENST00000382466ENST00000400590ENST00000415724ENST00000477811ENST00000494731ENST00000542645ENSG00000215571ENST00000400595ENSG00000222747ENST00000410815ENSG00000224429ENST00000411525ENST00000423575ENST00000434601ENST00000608957ENSG00000229137ENST00000453309ENSG00000233325ENST00000412105ENST00000424756ENSG00000233405ENST00000443719ENSG00000235076ENST00000449535ENSG00000235438ENST00000418437ENST00000427890ENST00000606337ENSG00000236953ENST00000417513ENSG00000277077ENST00000616818CIL_0004MB_0002ENSMUSG00000021967ENSMUST00000022538ENSMUSG00000021969ENSMUST00000089473ENSMUSG00000065374ENSMUST00000083440
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173141 ENST00000309594 4.343±0.00 8.321±0.00 0.747±0.00 4.963±1.67 3.153±2.04 3.537±2.47 4.621±3.60 6.602±4.25 5.009±3.82 2.837±2.03 5.717±2.56 7.254±3.32 8.145±2.56 4.972±2.25
ENSG00000180776 ENST00000320220 N/A N/A 2.531±0.00 N/A N/A N/A 0.806±0.00 N/A 3.831±0.00 N/A N/A N/A N/A N/A
ENST00000382466 N/A 2.739±0.00 N/A 1.825±0.80 0.750±0.00 3.622±0.00 N/A 1.871±0.10 2.969±0.00 3.243±1.70 N/A 3.266±1.70 2.737±0.80 4.418±0.00
ENST00000400590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.958±0.00
ENST00000415724 N/A N/A N/A N/A N/A N/A 1.358±0.00 N/A N/A N/A 1.191±0.00 N/A N/A 15.869±0.00
ENST00000464055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.077±0.00
ENST00000484277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494731 N/A N/A N/A 7.665±0.00 N/A N/A N/A N/A 6.885±0.00 N/A N/A 13.238±0.00 7.869±0.00 N/A
ENST00000542645 N/A N/A N/A N/A N/A 2.417±0.00 1.291±0.00 N/A N/A N/A N/A 1.842±0.17 1.481±0.89 2.266±0.00
ENSG00000215571 ENST00000400595 0.171±0.00 0.734±0.00 0.164±0.00 0.149±0.08 0.018±0.00 0.074±0.02 0.015±0.00 0.199±0.15 0.072±0.00 0.308±0.00 0.154±0.00 0.029±0.00 N/A 1.728±0.74
ENSG00000222747 ENST00000410815 N/A N/A N/A N/A N/A N/A N/A 1.189±0.00 N/A N/A N/A N/A N/A 0.181±0.00
ENSG00000224429 ENST00000411525 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A
ENST00000423575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.095±0.00 N/A
ENST00000434601 0.099±0.00 0.661±0.00 N/A N/A 0.204±0.00 N/A N/A 0.269±0.00 0.060±0.00 0.142±0.00 0.275±0.00 0.075±0.00 0.305±0.06 N/A
ENST00000608957 N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A 0.088±0.00 N/A N/A
ENSG00000229137 ENST00000453309 N/A N/A N/A 0.113±0.00 N/A 0.198±0.00 0.072±0.00 0.052±0.00 N/A N/A 0.068±0.00 N/A 0.077±0.00 0.199±0.04
ENSG00000233325 ENST00000412105 N/A 0.199±0.00 N/A 1.691±0.00 N/A N/A 0.134±0.00 1.079±0.00 N/A N/A N/A N/A N/A N/A
ENST00000424756 N/A 0.383±0.00 N/A 0.372±0.00 0.819±0.16 0.452±0.00 0.262±0.10 1.848±0.00 0.145±0.06 0.655±0.47 N/A 0.486±0.00 1.144±0.00 N/A
ENSG00000233405 ENST00000443719 N/A N/A N/A N/A N/A N/A 0.382±0.35 N/A 0.262±0.00 N/A N/A N/A N/A 0.592±0.37
ENSG00000235076 ENST00000449535 N/A 0.051±0.00 0.151±0.00 0.110±0.00 0.053±0.00 0.049±0.00 0.015±0.00 N/A N/A 0.031±0.00 N/A 0.062±0.02 0.066±0.02 2.047±1.49
ENSG00000235438 ENST00000418437 0.022±0.00 0.049±0.00 N/A N/A N/A N/A N/A 0.096±0.00 N/A 0.071±0.00 0.019±0.00 N/A 0.076±0.03 N/A
ENST00000427890 N/A 0.134±0.00 N/A 0.147±0.00 0.213±0.00 0.087±0.00 N/A N/A N/A N/A N/A N/A 0.181±0.04 N/A
ENST00000606337 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A
ENSG00000236953 ENST00000417513 1.689±0.00 6.205±0.00 N/A 2.629±0.00 0.555±0.00 1.388±0.00 0.270±0.00 1.082±0.00 0.521±0.00 0.608±0.00 0.073±0.00 1.515±1.14 0.283±0.15 1.205±0.16
ENSG00000277077 ENST00000616818 N/A N/A N/A 1.272±0.00 0.168±0.00 0.301±0.00 N/A 0.660±0.00 3.803±0.00 0.319±0.00 N/A 0.402±0.06 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021967 ENSMUST00000022538 10.416±2.67 39.669±5.06 8.238±2.13 6.485±5.36 14.941±8.49 23.125±3.79 5.212±1.57 12.266±2.71 14.684±5.41 10.639±3.70 2.897±1.16 24.392±12.48 4.643±3.66 17.538±9.26
ENSMUSG00000021969 ENSMUST00000089473 4.391±2.29 12.557±3.17 7.414±2.13 5.777±1.91 5.088±2.58 7.666±1.14 1.072±0.38 2.627±0.62 2.130±0.70 6.995±3.23 0.395±0.21 8.677±2.18 6.186±2.85 2.548±1.07
ENSMUSG00000065374 ENSMUST00000083440 N/A N/A N/A 3.167±0.72 N/A N/A N/A N/A 14.004±0.00 N/A 1.464±0.26 N/A 4.460±1.95 438.494±429.80

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