C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074905-ENSDARG00000026052 CGP 7955 4:7068416-7194615
GeneTranscriptPositionBiotype
ENSDARG00000026052 (ccdc3)
coiled-coil domain containing 3 		ENSDART00000036153 (ccdc3-001) 7182026-7194615 protein_coding
ENSDARG00000074905 (camk1da)
calcium/calmodulin-dependent protein kinase 1Da 		ENSDART00000104676 (camk1da-201) 7068416-7163167 protein_coding
CIL_0004RC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183049-ENSG00000151468 CGP 9606 10:12349482-13099652
GeneTranscriptPositionBiotype
ENSG00000123240 (OPTN)
optineurin 		ENST00000263036 (OPTN-006) 13099449-13136923 protein_coding
ENST00000378747 (OPTN-008) 13100225-13138291 protein_coding
ENST00000378748 (OPTN-005) 13100173-13138291 protein_coding
ENST00000378752 (OPTN-004) 13100173-13138291 protein_coding
ENST00000378757 (OPTN-007) 13100169-13138308 protein_coding
ENST00000378764 (OPTN-009) 13099603-13137129 protein_coding
ENST00000424614 (OPTN-001) 13116268-13123198 protein_coding
ENST00000430081 (OPTN-011) 13100173-13116327 nonsense_mediated_decay
ENST00000469025 (OPTN-003) 13131319-13136918 processed_transcript
ENST00000482140 (OPTN-002) 13100163-13118980 nonsense_mediated_decay
ENST00000486862 (OPTN-012) 13112487-13116540 protein_coding
ENST00000487935 (OPTN-010) 13100159-13109662 processed_transcript
ENSG00000151468 (CCDC3)
coiled-coil domain containing 3 		ENST00000378825 (CCDC3-002) 12896625-13001697 protein_coding
ENST00000378839 (CCDC3-001) 12896627-13099652 protein_coding
ENSG00000183049 (CAMK1D)
calcium/calmodulin-dependent protein kinase ID 		ENST00000378845 (CAMK1D-002) 12349733-12826143 protein_coding
ENST00000487696 (CAMK1D-003) 12349652-12666949 retained_intron
ENST00000615792 (CAMK1D-201) 12760576-12829736 protein_coding
ENST00000619168 (CAMK1D-001) 12349482-12835545 protein_coding
ENSG00000221331 (MIR548Q)
microRNA 548q 		ENST00000408404 (MIR548Q-201) 12725254-12725353 miRNA
ENSG00000225251 (RPL5P25)
ribosomal protein L5 pseudogene 25 		ENST00000441148 (RPL5P25-001) 13057902-13058676 processed_pseudogene
ENSG00000252118 (RNU6ATAC39P)
RNA, U6atac small nuclear 39, pseudogene 		ENST00000516309 (RNU6ATAC39P-201) 12456483-12456631 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RC_0001ENSDARG00000026052ENSDART00000036153ENSDARG00000074905ENSDART00000104676CIL_0004RC_0002ENSG00000123240ENST00000263036ENST00000378747ENST00000378748ENST00000378752ENST00000378757ENST00000378764ENST00000424614ENST00000430081ENST00000469025ENST00000482140ENST00000486862ENST00000487935ENSG00000151468ENST00000378825ENST00000378839ENSG00000183049ENST00000378845ENST00000487696ENST00000615792ENST00000619168ENSG00000221331ENST00000408404ENSG00000225251ENST00000441148ENSG00000252118ENST00000516309
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RC_0001ENSDARG00000026052ENSDART00000036153ENSDARG00000074905ENSDART00000104676CIL_0004RC_0002ENSG00000123240ENST00000263036ENST00000378747ENST00000378748ENST00000378752ENST00000378757ENST00000378764ENST00000424614ENSG00000151468ENST00000378825ENSG00000183049ENST00000378845ENST00000615792ENST00000619168ENSG00000221331ENST00000408404ENSG00000225251ENST00000441148ENSG00000252118ENST00000516309
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026052 ENSDART00000036153 N/A N/A N/A 0.884±0.24 N/A N/A 0.189±0.15 0.448±0.07 N/A N/A 0.184±0.00 N/A N/A N/A
ENSDARG00000074905 ENSDART00000104676 N/A N/A N/A N/A N/A N/A 0.145±0.07 1.135±0.08 0.030±0.00 N/A 0.275±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123240 ENST00000263036 27.177±0.00 17.873±0.00 N/A 10.678±0.00 46.810±0.00 36.907±0.00 28.153±0.00 10.689±0.00 7.416±0.00 39.607±0.00 257.780±0.00 26.230±17.54 14.348±8.42 49.924±7.31
ENST00000378747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.623±0.00 N/A N/A
ENST00000378748 N/A N/A N/A N/A N/A N/A N/A N/A 2.097±0.00 N/A N/A N/A N/A N/A
ENST00000378752 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.740±0.00 N/A N/A N/A N/A
ENST00000378757 7.885±0.00 6.322±0.00 1.912±0.00 10.801±1.48 10.749±5.34 10.632±7.29 9.219±6.16 5.910±1.79 2.581±0.87 3.641±0.00 56.913±49.41 17.116±10.26 8.965±1.63 16.104±0.00
ENST00000378764 13.802±0.00 N/A 3.633±0.00 4.194±0.00 3.993±0.00 4.000±0.00 7.696±5.02 5.020±0.28 3.808±0.00 2.888±0.00 17.621±0.00 13.517±0.00 5.988±0.00 N/A
ENST00000424614 N/A N/A 20.612±0.00 40.607±0.00 29.392±0.00 18.861±0.00 15.300±0.00 23.885±0.00 27.740±0.00 22.193±0.00 62.802±0.00 41.072±0.00 N/A N/A
ENST00000430081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151468 ENST00000378825 28.091±0.00 54.600±0.00 7.039±0.00 12.837±0.00 55.037±48.47 17.001±0.00 N/A 8.065±0.00 5.936±0.93 29.839±0.00 N/A 56.923±37.93 22.927±3.47 53.815±0.00
ENST00000378839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183049 ENST00000378845 N/A N/A 0.317±0.00 N/A N/A N/A N/A N/A 1.570±0.00 1.877±0.00 N/A 4.012±0.00 N/A 1.504±0.00
ENST00000487696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615792 N/A N/A N/A N/A N/A 1.752±0.00 0.829±0.00 N/A N/A N/A N/A 9.083±0.00 0.479±0.00 4.430±0.00
ENST00000619168 0.787±0.00 1.324±0.00 0.042±0.00 6.487±2.18 1.018±0.33 1.618±0.00 0.252±0.10 1.781±0.00 2.643±1.38 1.564±0.19 0.157±0.13 2.954±1.36 0.396±0.04 3.071±0.00
ENSG00000221331 ENST00000408404 N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000225251 ENST00000441148 0.049±0.00 0.051±0.00 N/A 0.069±0.00 0.033±0.00 0.091±0.08 N/A 0.034±0.00 0.015±0.00 0.016±0.00 0.061±0.00 0.120±0.09 0.029±0.00 0.036±0.02
ENSG00000252118 ENST00000516309 N/A 0.510±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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