C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0005G4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102221-ENSG00000130988 CGP 9606 X:46912276-47093314
GeneTranscriptPositionBiotype
ENSG00000102221 (JADE3)
jade family PHD finger 3
ENST00000424392 (JADE3-002) 46912276-47027976 protein_coding
ENST00000455411 (JADE3-003) 46912796-47024783 protein_coding
ENST00000611250 (JADE3-201) 46912276-47061242 protein_coding
ENST00000614628 (JADE3-001) 46912433-47061241 protein_coding
ENSG00000130988 (RGN)
regucalcin
ENST00000336169 (RGN-002) 47080859-47093310 protein_coding
ENST00000352078 (RGN-001) 47078380-47093313 protein_coding
ENST00000397180 (RGN-201) 47078355-47093314 protein_coding
ENST00000457380 (RGN-202) 47078355-47093314 protein_coding
ENST00000469346 (RGN-004) 47078425-47084961 processed_transcript
ENST00000475448 (RGN-003) 47084538-47093308 processed_transcript
ENSG00000206685 (RNU6-1189P)
RNA, U6 small nuclear 1189, pseudogene
ENST00000383958 (RNU6-1189P-201) 47087506-47087612 snRNA
CIL_0005G4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037315-ENSMUSG00000023070 CGP 10090 X:20425688-20562089
GeneTranscriptPositionBiotype
ENSMUSG00000023070 (Rgn)
regucalcin
ENSMUST00000023832 (Rgn-001) 20549787-20562089 protein_coding
ENSMUSG00000037315 (Jade3)
jade family PHD finger 3
ENSMUST00000043693 (Jade3-201) 20460527-20517896 protein_coding
ENSMUST00000115384 (Jade3-001) 20425688-20519939 protein_coding
ENSMUST00000136093 (Jade3-002) 20425788-20494586 retained_intron
ENSMUSG00000081390 (Gm14538)
predicted gene 14538
ENSMUST00000122019 (Gm14538-001) 20528256-20529582 processed_pseudogene
ENSMUSG00000081529 (Gm14884)
predicted gene 14884
ENSMUST00000120456 (Gm14884-001) 20459490-20459685 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005G4_0001ENSG00000102221ENST00000424392ENST00000455411ENST00000611250ENST00000614628ENSG00000130988ENST00000336169ENST00000352078ENST00000397180ENST00000457380ENST00000469346ENST00000475448ENSG00000206685ENST00000383958CIL_0005G4_0002ENSMUSG00000023070ENSMUST00000023832ENSMUSG00000037315ENSMUST00000043693ENSMUST00000115384ENSMUST00000136093ENSMUSG00000081390ENSMUST00000122019ENSMUSG00000081529ENSMUST00000120456
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005G4_0001ENSG00000102221ENST00000424392ENST00000611250ENST00000614628ENSG00000130988ENST00000336169ENST00000352078ENST00000397180ENST00000457380ENST00000475448ENSG00000206685ENST00000383958CIL_0005G4_0002ENSMUSG00000023070ENSMUST00000023832ENSMUSG00000037315ENSMUST00000043693ENSMUST00000115384ENSMUST00000136093ENSMUSG00000081390ENSMUST00000122019ENSMUSG00000081529ENSMUST00000120456
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102221 ENST00000424392 N/A N/A N/A 0.409±0.00 N/A N/A N/A N/A 2.088±0.00 N/A N/A N/A N/A 7.093±0.00
ENST00000455411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611250 N/A 1.212±0.00 0.231±0.00 0.279±0.00 1.383±0.00 0.323±0.00 N/A 0.999±0.43 0.617±0.40 1.487±0.00 0.684±0.00 2.371±0.00 4.385±0.00 4.242±0.55
ENST00000614628 2.199±0.00 1.819±0.00 0.155±0.00 1.420±0.00 1.967±0.00 1.707±1.33 1.035±0.66 1.779±0.00 0.734±0.54 0.582±0.05 0.249±0.00 2.241±0.84 3.821±2.33 2.625±1.03
ENSG00000130988 ENST00000336169 N/A N/A N/A N/A N/A N/A 0.865±0.00 22.514±0.00 14.528±0.00 N/A N/A 0.557±0.00 1.471±0.67 0.696±0.00
ENST00000352078 0.407±0.00 1.193±0.00 2.759±0.00 4.369±1.93 2.537±1.69 0.938±0.00 4.171±0.00 15.331±9.27 17.095±14.70 2.701±1.92 0.937±0.32 4.758±2.60 5.278±2.75 1.543±0.31
ENST00000397180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A
ENST00000457380 N/A N/A N/A 1.675±0.74 0.790±0.42 N/A 1.347±1.01 25.437±0.00 0.439±0.00 0.985±0.00 0.254±0.00 0.984±0.89 2.130±0.00 N/A
ENST00000469346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475448 1.301±0.00 1.117±0.00 N/A 8.828±0.00 N/A 0.919±0.63 2.227±0.00 8.068±0.00 28.332±0.00 N/A N/A 3.950±3.37 1.402±0.00 4.125±0.00
ENSG00000206685 ENST00000383958 N/A N/A N/A N/A 0.206±0.00 N/A N/A 2.253±0.00 N/A N/A N/A N/A N/A 0.471±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023070 ENSMUST00000023832 0.034±0.00 0.361±0.14 0.073±0.00 0.081±0.02 0.735±0.45 0.193±0.07 0.147±0.06 1.111±0.60 238.455±120.91 0.211±0.11 0.053±0.04 0.561±0.24 0.305±0.20 0.258±0.13
ENSMUSG00000037315 ENSMUST00000043693 0.214±0.00 N/A N/A 1.427±0.00 0.375±0.26 0.330±0.13 N/A 0.151±0.00 N/A 0.356±0.12 0.024±0.00 0.901±0.48 20.271±6.38 1.837±0.00
ENSMUST00000115384 0.534±0.19 0.348±0.11 2.878±0.45 1.325±0.70 0.287±0.14 0.350±0.26 0.211±0.04 0.439±0.10 1.278±1.20 0.919±0.11 0.077±0.03 1.573±1.37 31.573±2.79 1.857±0.76
ENSMUST00000136093 N/A 0.333±0.03 N/A 0.639±0.00 0.184±0.00 N/A N/A N/A 0.406±0.07 N/A 0.060±0.00 1.616±0.99 28.236±0.00 2.199±0.00
ENSMUSG00000081390 ENSMUST00000122019 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.01 N/A N/A 0.016±0.00 0.011±0.01 N/A
ENSMUSG00000081529 ENSMUST00000120456 N/A N/A N/A 0.396±0.00 5.213±0.00 N/A 1.785±0.03 N/A 1.726±0.94 N/A N/A N/A 1.546±0.20 2.765±0.00

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