C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6316
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082064 Gm6316-001 ENSMUSG00000078370 10090 - 12:69920472-69921491 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082064
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082064 0.185±0.09 0.107±0.07 0.911±0.80 0.431±0.42 0.110±0.04 0.079±0.04 0.120±0.07 0.139±0.13 0.366±0.63 0.075±0.05 1.589±0.77 0.203±0.10 0.122±0.05 0.270±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HD CIL_0005HD_0003 CGP 12:69803750-69964085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 420
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1127
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 1074
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1101
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1127
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1127
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 494
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 874
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 809
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 941
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 795
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 553
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 760
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 750
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1011
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 876
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 601
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 806
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 726
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 608
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 619
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 560
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 4e-32 139
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 451
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 601
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 933
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 933
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 531
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 773
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 832
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 798
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 896
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 610
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 289
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 226
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 797
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 861
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 891
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 776
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 525
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1009

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