C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005MW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043235-ENSDARG00000022122 CGP 7955 16:20986-90312
GeneTranscriptPositionBiotype
ENSDARG00000022122 (cdkal1)
CDK5 regulatory subunit associated protein 1-like 1 		ENSDART00000029313 (cdkal1-201) 34367-90312 protein_coding
ENSDARG00000043235 (sox4b)
SRY-box containing gene 4b 		ENSDART00000063476 (sox4b-201) 20986-22432 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005MW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000076431-ENSMUSG00000006191 CGP 10090 13:28948919-29855674
GeneTranscriptPositionBiotype
ENSMUSG00000006191 (Cdkal1)
CDK5 regulatory subunit associated protein 1-like 1 		ENSMUST00000006353 (Cdkal1-001) 29325301-29855674 protein_coding
ENSMUST00000091674 (Cdkal1-004) 29802441-29855663 protein_coding
ENSMUST00000110323 (Cdkal1-005) 29402593-29474607 protein_coding
ENSMUST00000123641 (Cdkal1-011) 29708841-29855657 retained_intron
ENSMUST00000124532 (Cdkal1-010) 29777296-29855431 protein_coding
ENSMUST00000129231 (Cdkal1-009) 29836995-29855665 nonsense_mediated_decay
ENSMUST00000131792 (Cdkal1-003) 29473868-29855643 retained_intron
ENSMUST00000137225 (Cdkal1-008) 29521837-29855639 nonsense_mediated_decay
ENSMUST00000140278 (Cdkal1-007) 29191746-29855647 nonsense_mediated_decay
ENSMUST00000153086 (Cdkal1-006) 29514207-29855643 retained_intron
ENSMUST00000154209 (Cdkal1-002) 29443776-29517454 protein_coding
ENSMUSG00000076431 (Sox4)
SRY (sex determining region Y)-box 4 		ENSMUST00000067230 (Sox4-001) 28948919-28953713 protein_coding
ENSMUSG00000082730 (Gm11363)
predicted gene 11363 		ENSMUST00000121672 (Gm11363-001) 29130250-29130758 processed_pseudogene
ENSMUSG00000086363 (A330102I10Rik)
RIKEN cDNA A330102I10 gene 		ENSMUST00000130109 (A330102I10Rik-001) 29014472-29028729 lincRNA
ENSMUST00000140415 (A330102I10Rik-004) 29016293-29028797 lincRNA
ENSMUST00000145801 (A330102I10Rik-003) 29016708-29040336 lincRNA
ENSMUST00000146336 (A330102I10Rik-002) 29014399-29015665 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MW_0001ENSDARG00000022122ENSDART00000029313ENSDARG00000043235ENSDART00000063476CIL_0005MW_0002ENSMUSG00000006191ENSMUST00000006353ENSMUST00000091674ENSMUST00000110323ENSMUST00000123641ENSMUST00000124532ENSMUST00000129231ENSMUST00000131792ENSMUST00000137225ENSMUST00000140278ENSMUST00000153086ENSMUST00000154209ENSMUSG00000076431ENSMUST00000067230ENSMUSG00000082730ENSMUST00000121672ENSMUSG00000086363ENSMUST00000130109ENSMUST00000140415ENSMUST00000145801ENSMUST00000146336
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MW_0001ENSDARG00000022122ENSDART00000029313ENSDARG00000043235ENSDART00000063476CIL_0005MW_0002ENSMUSG00000006191ENSMUST00000006353ENSMUST00000123641ENSMUST00000129231ENSMUST00000131792ENSMUST00000137225ENSMUST00000153086ENSMUSG00000076431ENSMUST00000067230ENSMUSG00000082730ENSMUST00000121672ENSMUSG00000086363ENSMUST00000130109ENSMUST00000140415ENSMUST00000145801ENSMUST00000146336
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022122 ENSDART00000029313 N/A N/A N/A 1.064±0.05 N/A N/A 4.068±2.90 0.963±0.00 4.336±0.00 N/A 3.433±0.00 N/A N/A N/A
ENSDARG00000043235 ENSDART00000063476 N/A N/A N/A N/A N/A N/A 0.365±0.00 1.115±0.00 0.303±0.00 N/A 1.878±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006191 ENSMUST00000006353 2.074±0.31 0.877±0.46 3.352±0.80 1.211±0.27 1.513±0.52 0.862±0.30 2.344±0.22 2.265±0.26 1.460±0.21 1.989±0.50 5.504±0.48 1.339±1.15 2.368±0.94 8.118±2.38
ENSMUST00000091674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123641 N/A N/A N/A 2.397±0.00 N/A N/A N/A N/A N/A N/A N/A 2.994±0.00 4.331±0.00 13.546±0.00
ENSMUST00000124532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129231 N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131792 N/A 0.300±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.14 N/A N/A
ENSMUST00000137225 N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153086 N/A 0.103±0.00 N/A N/A 0.108±0.00 0.113±0.03 N/A N/A N/A N/A N/A 0.127±0.01 N/A N/A
ENSMUST00000154209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000076431 ENSMUST00000067230 21.778±11.75 24.599±3.55 10.782±1.50 96.090±71.39 19.611±11.87 14.696±1.59 4.543±0.87 5.256±1.77 1.501±1.12 19.641±4.43 0.649±0.19 113.057±44.33 4.087±1.41 0.804±0.28
ENSMUSG00000082730 ENSMUST00000121672 N/A N/A N/A 0.020±0.00 N/A N/A 0.105±0.00 N/A N/A N/A N/A 0.094±0.00 N/A N/A
ENSMUSG00000086363 ENSMUST00000130109 0.097±0.00 N/A 0.183±0.00 N/A 0.389±0.21 0.182±0.01 0.481±0.28 0.130±0.06 N/A N/A 0.143±0.02 0.276±0.13 0.369±0.03 0.141±0.03
ENSMUST00000140415 0.485±0.02 0.140±0.00 0.048±0.00 5.089±0.63 0.133±0.00 0.175±0.07 0.983±0.23 N/A 0.017±0.00 0.118±0.02 0.151±0.03 0.207±0.13 0.084±0.02 0.063±0.00
ENSMUST00000145801 N/A N/A N/A N/A N/A 0.315±0.00 N/A 0.055±0.00 N/A N/A 0.054±0.01 N/A 0.055±0.02 N/A
ENSMUST00000146336 N/A N/A N/A 9.214±0.00 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 0.099±0.01 N/A

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