C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005S0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143811-ENSG00000143768 CGP 9606 1:225919877-225941489
GeneTranscriptPositionBiotype
ENSG00000143768 (LEFTY2)
left-right determination factor 2 		ENST00000366820 (LEFTY2-001) 225936604-225941489 protein_coding
ENST00000420304 (LEFTY2-201) 225936598-225941383 protein_coding
ENST00000474493 (LEFTY2-002) 225939432-225940101 processed_transcript
ENST00000616737 (LEFTY2-202) 225936628-225941173 protein_coding
ENSG00000143811 (PYCR2)
pyrroline-5-carboxylate reductase family, member 2 		ENST00000343818 (PYCR2-001) 225919878-225924259 protein_coding
ENST00000446534 (PYCR2-008) 225921222-225923079 retained_intron
ENST00000466127 (PYCR2-009) 225921216-225921934 retained_intron
ENST00000467298 (PYCR2-005) 225923140-225924000 retained_intron
ENST00000472798 (PYCR2-007) 225922029-225923891 protein_coding
ENST00000478402 (PYCR2-002) 225919878-225924278 retained_intron
ENST00000489681 (PYCR2-006) 225921604-225923993 protein_coding
ENST00000612039 (PYCR2-201) 225919877-225924340 protein_coding
ENST00000612651 (PYCR2-202) 225919877-225924110 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0005S0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026520-ENSMUSG00000038793 CGP 10090 1:180904274-180938400
GeneTranscriptPositionBiotype
ENSMUSG00000026520 (Pycr2)
pyrroline-5-carboxylate reductase family, member 2 		ENSMUST00000027802 (Pycr2-201) 180904274-180908087 protein_coding
ENSMUSG00000038793 (Lefty1)
left right determination factor 1 		ENSMUST00000037361 (Lefty1-001) 180935022-180938400 protein_coding
ENSMUST00000132087 (Lefty1-002) 180936871-180937810 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S0_0001ENSG00000143768ENST00000366820ENST00000420304ENST00000474493ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000466127ENST00000467298ENST00000472798ENST00000478402ENST00000489681ENST00000612039ENST00000612651CIL_0005S0_0002ENSMUSG00000026520ENSMUST00000027802ENSMUSG00000038793ENSMUST00000037361ENSMUST00000132087
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S0_0001ENSG00000143768ENST00000366820ENST00000420304ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000467298ENST00000478402ENST00000489681ENST00000612039ENST00000612651CIL_0005S0_0002ENSMUSG00000026520ENSMUST00000027802ENSMUSG00000038793ENSMUST00000037361ENSMUST00000132087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143768 ENST00000366820 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.682±0.00 N/A N/A N/A N/A
ENST00000420304 N/A N/A N/A 0.338±0.00 N/A 0.064±0.00 N/A N/A N/A N/A N/A 19.981±26.04 3.923±2.50 0.991±0.00
ENST00000474493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616737 N/A 0.347±0.00 N/A 0.028±0.00 0.432±0.04 0.284±0.25 0.151±0.11 0.787±0.00 0.044±0.00 0.980±0.81 0.051±0.00 31.542±24.41 4.849±2.35 2.159±1.64
ENSG00000143811 ENST00000343818 14.601±0.00 16.952±0.00 1.715±0.00 18.728±0.00 8.201±4.69 7.655±6.74 17.147±0.00 33.151±0.00 7.004±5.89 17.116±15.91 14.402±11.19 27.161±10.11 32.185±5.12 28.456±0.00
ENST00000446534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.405±0.00 N/A N/A
ENST00000466127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467298 N/A N/A N/A N/A N/A N/A N/A 1.587±0.00 N/A N/A N/A N/A N/A N/A
ENST00000472798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478402 N/A N/A N/A 1.226±0.00 0.692±0.00 N/A 0.320±0.00 N/A N/A N/A N/A 4.811±0.00 N/A 3.610±0.00
ENST00000489681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.668±0.00 N/A 15.907±0.00
ENST00000612039 3.460±0.00 8.776±0.00 1.257±0.00 6.169±0.33 3.084±0.80 2.482±0.00 3.344±0.00 N/A 1.892±0.00 1.480±0.00 5.117±0.00 16.073±11.03 N/A 19.723±0.00
ENST00000612651 N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 3.379±0.00 1.011±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026520 ENSMUST00000027802 11.838±3.33 36.073±3.22 18.161±4.23 9.416±1.25 15.010±6.85 17.501±5.88 5.282±1.37 9.103±1.66 18.709±17.95 15.718±3.14 7.487±1.40 26.978±9.29 12.851±4.54 4.173±0.86
ENSMUSG00000038793 ENSMUST00000037361 1.833±0.43 2.903±1.59 3.693±2.37 0.087±0.04 1.159±0.50 0.901±0.00 0.520±0.10 0.450±0.10 0.798±1.00 1.167±0.48 0.349±0.17 1.497±0.41 0.403±0.36 0.288±0.11
ENSMUST00000132087 3.504±1.01 9.599±2.86 9.851±0.00 0.498±0.17 3.811±1.17 7.970±1.83 0.717±0.21 1.028±0.35 2.423±2.41 3.347±0.11 0.197±0.00 5.841±1.59 1.217±0.88 0.491±0.18

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