C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: left-right determination factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420304 LEFTY2-201 ENSG00000143768 9606 - 1:225936598-225941383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENST00000420304
Transcript ID Brain Colon Ovary Placenta Testis
ENST00000420304 0.338±0.00 0.064±0.00 19.981±26.04 3.923±2.50 0.991±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183
CIL_0005S0 CIL_0005S0_0001 CGP 1:225919877-225941489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005125 IEA cytokine activity
GO:0005160 IEA transforming growth factor beta receptor binding
GO:0005576 TAS extracellular region
GO:0005615 IEA extracellular space
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0007596 TAS blood coagulation
GO:0008083 IEA growth factor activity
GO:0016049 IEA cell growth
GO:0030168 TAS platelet activation
GO:0031012 IDA extracellular matrix
GO:0031093 TAS platelet alpha granule lumen
GO:0040007 IEA growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037361 Lefty1-001 protein_coding Mus_musculus 0 723
ENSMUST00000085797 Lefty2-001 protein_coding Mus_musculus 0 652
ENSMUST00000132087 Lefty1-002 retained_intron Mus_musculus 0 440
ENSMUST00000155546 Lefty2-002 retained_intron Mus_musculus 0 294

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