C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429856 HMGB1P9-001 ENSG00000224159 9606 + 2:218200434-218201388 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryTestisENST00000429856
Transcript ID Brain Breast Muscle Ovary Testis
ENST00000429856 0.020±0.00 0.041±0.00 0.019±0.00 0.019±0.00 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WL CIL_0007WL_0001 VISTA 2:217636448-218238840
CIL_0005VM CIL_0005VM_0001 CGP 2:218162845-218254356

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 713
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 702
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 619
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0 318

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