C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type II, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337299 COL2A1-008 ENSG00000139219 9606 - 12:47973407-48004321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000337299
Transcript ID Brain Ovary Testis
ENST00000337299 0.029±0.00 0.015±0.00 0.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YL CIL_0005YL_0001 CGP 12:47963569-48004486
CIL_00079B CIL_00079B_0001 CGP 12:47972965-48106308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005585 IDA collagen type II trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0007601 IMP visual perception
GO:0007605 IMP sensory perception of sound
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 IC extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0042802 NAS identical protein binding
GO:0046872 IEA metal ion binding
GO:0048407 IDA platelet-derived growth factor binding
GO:0051216 TAS cartilage development
GO:0060272 IMP embryonic skeletal joint morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088355 Col2a1-002 protein_coding Mus_musculus 0 5326
ENSMUST00000023123 Col2a1-001 protein_coding Mus_musculus 0 5212
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 0 955
ENSMUST00000139246 Col2a1-006 retained_intron Mus_musculus 0 730
ENSMUST00000133488 Col2a1-005 processed_transcript Mus_musculus 0 658
ENSMUST00000131910 Col2a1-008 retained_intron Mus_musculus 0 525
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 254
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 254
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 3e-39 169

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