C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type II, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493991 COL2A1-007 ENSG00000139219 9606 - 12:47973201-47988471 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverMusclePlacentaENST00000493991
Transcript ID Adrenal Brain Breast Colon Heart Liver Muscle Placenta
ENST00000493991 0.015±0.00 0.075±0.01 0.029±0.00 0.037±0.00 0.007±0.00 0.036±0.00 0.032±0.00 0.105±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YL CIL_0005YL_0001 CGP 12:47963569-48004486
CIL_00079B CIL_00079B_0001 CGP 12:47972965-48106308

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088355 Col2a1-002 protein_coding Mus_musculus 0 2837
ENSMUST00000023123 Col2a1-001 protein_coding Mus_musculus 0 2837
ENSMUST00000131910 Col2a1-008 retained_intron Mus_musculus 0 525
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 0 496
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 254
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 254
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 2e-39 169

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