C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00062E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061941-ENSDARG00000061921 CGP 7955 5:21579305-21645094
GeneTranscriptPositionBiotype
ENSDARG00000061921 (gltpa)
glycolipid transfer protein a 		ENSDART00000088904 (gltpa-001) 21634156-21645094 protein_coding
ENSDARG00000061941 (trpv4)
transient receptor potential cation channel, subfamily V, member 4 		ENSDART00000138186 (trpv4-001) 21579305-21616638 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00062E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111199-ENSG00000139433 CGP 9606 12:109783085-109880488
GeneTranscriptPositionBiotype
ENSG00000111199 (TRPV4)
transient receptor potential cation channel, subfamily V, member 4 		ENST00000261740 (TRPV4-001) 109783087-109833401 protein_coding
ENST00000418703 (TRPV4-006) 109783085-109814891 protein_coding
ENST00000536570 (TRPV4-008) 109814701-109832735 processed_transcript
ENST00000536838 (TRPV4-005) 109783621-109814796 protein_coding
ENST00000537083 (TRPV4-003) 109783621-109814796 protein_coding
ENST00000538125 (TRPV4-007) 109783558-109833401 nonsense_mediated_decay
ENST00000541794 (TRPV4-004) 109783621-109814796 protein_coding
ENST00000544971 (TRPV4-002) 109783621-109814796 protein_coding
ENSG00000139433 (GLTP)
glycolipid transfer protein 		ENST00000318348 (GLTP-001) 109850943-109880488 protein_coding
ENST00000536390 (GLTP-003) 109852665-109880383 nonsense_mediated_decay
ENST00000537066 (GLTP-002) 109855618-109880378 nonsense_mediated_decay
ENST00000540772 (GLTP-005) 109852545-109880325 protein_coding
ENST00000544393 (GLTP-004) 109852261-109880421 protein_coding
ENST00000617457 (GLTP-201) 109852555-109880374 protein_coding
ENSG00000241413 (RN7SL441P)
RNA, 7SL, cytoplasmic 441, pseudogene 		ENST00000492388 (RN7SL441P-201) 109866214-109866509 misc_RNA
ENSG00000256351 (RP1-7G5.5)
 ENST00000536310 (RP1-7G5.5-001) 109859767-109860420 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00062E_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000014158-ENSMUSG00000011884 CGP 10090 5:114622152-114690984
GeneTranscriptPositionBiotype
ENSMUSG00000011884 (Gltp)
glycolipid transfer protein 		ENSMUST00000012028 (Gltp-001) 114669403-114690984 protein_coding
ENSMUST00000112212 (Gltp-003) 114670228-114690908 protein_coding
ENSMUST00000112214 (Gltp-002) 114670083-114690941 protein_coding
ENSMUSG00000014158 (Trpv4)
transient receptor potential cation channel, subfamily V, member 4 		ENSMUST00000071968 (Trpv4-001) 114622152-114658421 protein_coding
ENSMUST00000112217 (Trpv4-007) 114622653-114644899 protein_coding
ENSMUST00000112219 (Trpv4-006) 114622653-114644899 protein_coding
ENSMUST00000112222 (Trpv4-005) 114622653-114644899 protein_coding
ENSMUST00000112225 (Trpv4-002) 114622154-114658418 protein_coding
ENSMUST00000133019 (Trpv4-004) 114622157-114636261 retained_intron
ENSMUST00000141828 (Trpv4-003) 114626744-114630638 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062E_0001ENSDARG00000061921ENSDART00000088904ENSDARG00000061941ENSDART00000138186CIL_00062E_0002ENSG00000111199ENST00000261740ENST00000418703ENST00000536570ENST00000536838ENST00000537083ENST00000538125ENST00000541794ENST00000544971ENSG00000139433ENST00000318348ENST00000536390ENST00000537066ENST00000540772ENST00000544393ENST00000617457ENSG00000241413ENST00000492388ENSG00000256351ENST00000536310CIL_00062E_0003ENSMUSG00000011884ENSMUST00000012028ENSMUST00000112212ENSMUST00000112214ENSMUSG00000014158ENSMUST00000071968ENSMUST00000112217ENSMUST00000112219ENSMUST00000112222ENSMUST00000112225ENSMUST00000133019ENSMUST00000141828
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062E_0001ENSDARG00000061921ENSDART00000088904ENSDARG00000061941ENSDART00000138186CIL_00062E_0002ENSG00000111199ENST00000261740ENST00000418703ENST00000536570ENST00000536838ENST00000537083ENST00000538125ENST00000541794ENST00000544971ENSG00000139433ENST00000318348ENST00000544393ENSG00000241413ENST00000492388ENSG00000256351ENST00000536310CIL_00062E_0003ENSMUSG00000011884ENSMUST00000012028ENSMUST00000112214ENSMUSG00000014158ENSMUST00000071968ENSMUST00000112217ENSMUST00000112219ENSMUST00000112222ENSMUST00000112225ENSMUST00000133019ENSMUST00000141828
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061921 ENSDART00000088904 N/A N/A N/A N/A N/A N/A 1.087±0.31 3.715±0.31 0.561±0.00 N/A 1.266±0.00 N/A N/A N/A
ENSDARG00000061941 ENSDART00000138186 N/A N/A N/A 0.292±0.01 N/A N/A 6.852±4.43 0.647±0.59 N/A N/A 1.876±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111199 ENST00000261740 0.178±0.00 N/A N/A 0.082±0.00 N/A 0.042±0.00 0.093±0.00 3.392±0.00 0.382±0.00 N/A N/A 0.579±0.14 3.630±1.86 N/A
ENST00000418703 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.148±0.00 N/A N/A N/A N/A
ENST00000536570 N/A N/A N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536838 N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A 0.298±0.04 1.790±0.98 N/A
ENST00000537083 N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538125 N/A N/A 0.394±0.00 N/A 0.212±0.00 N/A N/A 0.211±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541794 N/A N/A 3.030±0.00 0.147±0.00 N/A N/A N/A 0.463±0.00 N/A N/A N/A N/A 1.926±0.00 N/A
ENST00000544971 N/A N/A N/A 0.077±0.00 N/A 0.076±0.00 N/A N/A 0.133±0.00 N/A N/A N/A N/A 0.422±0.00
ENSG00000139433 ENST00000318348 21.132±0.00 12.811±0.00 1.470±0.00 11.649±5.84 7.861±5.18 6.224±2.62 4.769±3.63 9.773±8.75 4.289±0.85 10.960±8.78 4.394±3.96 10.433±5.16 9.019±4.44 7.200±3.01
ENST00000536390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.00 6.540±0.00 N/A 4.705±0.00
ENST00000617457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241413 ENST00000492388 N/A 0.337±0.00 N/A 0.238±0.00 N/A 0.472±0.00 N/A 0.056±0.00 N/A N/A 0.348±0.00 0.956±0.33 N/A 0.322±0.04
ENSG00000256351 ENST00000536310 N/A 0.275±0.00 N/A 0.517±0.28 0.114±0.00 0.083±0.00 N/A 0.060±0.00 0.843±0.00 0.025±0.00 N/A 0.215±0.00 N/A 0.239±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000011884 ENSMUST00000012028 30.563±9.41 25.357±6.43 87.182±10.66 7.588±4.30 28.809±11.22 42.801±4.77 10.419±2.60 25.299±2.67 9.290±7.83 56.455±7.51 4.007±0.24 19.485±5.68 20.562±15.22 3.057±1.55
ENSMUST00000112212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112214 17.829±3.52 47.404±11.71 N/A 3.636±0.00 35.367±3.87 40.410±9.94 3.804±1.29 7.657±0.00 0.586±0.08 33.473±4.37 N/A 18.840±4.53 N/A 1.384±0.00
ENSMUSG00000014158 ENSMUST00000071968 3.735±0.79 0.894±0.32 14.621±1.55 0.187±0.02 4.240±1.67 0.974±0.27 1.142±0.41 32.430±5.52 0.098±0.06 1.680±0.64 0.225±0.05 2.222±0.31 0.183±0.01 N/A
ENSMUST00000112217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.438±0.00 0.471±0.00 N/A 0.154±0.00
ENSMUST00000112219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.395±0.07 N/A
ENSMUST00000112222 N/A N/A N/A 0.361±0.00 1.247±0.00 N/A 0.618±0.00 N/A N/A N/A N/A 0.888±0.21 N/A 0.051±0.00
ENSMUST00000112225 1.741±0.76 0.902±0.28 9.358±1.77 0.142±0.03 1.542±0.44 N/A 0.563±0.00 18.626±2.16 0.057±0.02 1.165±0.36 0.201±0.03 2.818±1.16 0.382±0.20 0.195±0.05
ENSMUST00000133019 0.969±0.10 0.414±0.11 4.253±0.37 0.173±0.01 1.010±0.16 0.377±0.20 N/A N/A 0.103±0.06 0.621±0.14 0.111±0.00 0.811±0.38 0.115±0.03 0.145±0.01
ENSMUST00000141828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.356±0.00 N/A 0.130±0.00 N/A

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