C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071968 Trpv4-001 ENSMUSG00000014158 10090 - 5:114622152-114658421 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000071968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000071968 3.735±0.79 0.894±0.32 14.621±1.55 0.187±0.02 4.240±1.67 0.974±0.27 1.142±0.41 32.430±5.52 0.098±0.06 1.680±0.64 0.225±0.05 2.222±0.31 0.183±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JO CIL_0001JO_0003 CGP 5:114568016-114658421
CIL_00062E CIL_00062E_0003 CGP 5:114622152-114690984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005034 IDA osmosensor activity
GO:0005080 IEA protein kinase C binding
GO:0005261 ISS cation channel activity
GO:0005262 IDA calcium channel activity
GO:0005515 IPI protein binding
GO:0005516 ISS calmodulin binding
GO:0005524 IEA ATP binding
GO:0005881 IEA cytoplasmic microtubule
GO:0005886 ISS plasma membrane
GO:0005912 IDA adherens junction
GO:0005925 IEA focal adhesion
GO:0005929 IDA cilium
GO:0006874 ISS cellular calcium ion homeostasis
GO:0006970 IDA response to osmotic stress
GO:0006971 IEA hypotonic response
GO:0007015 IEA actin filament organization
GO:0007043 IMP cell-cell junction assembly
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007231 IDA osmosensory signaling pathway
GO:0008017 IEA microtubule binding
GO:0009986 IEA cell surface
GO:0010977 IEA negative regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0019901 IPI protein kinase binding
GO:0030027 IEA lamellipodium
GO:0030103 IMP vasopressin secretion
GO:0030175 IEA filopodium
GO:0030426 IEA growth cone
GO:0030864 IEA cortical actin cytoskeleton
GO:0031117 IEA positive regulation of microtubule depolymerization
GO:0031410 IEA cytoplasmic vesicle
GO:0031532 IEA actin cytoskeleton reorganization
GO:0032587 IEA ruffle membrane
GO:0034605 IMP cellular response to heat
GO:0042169 IPI SH2 domain binding
GO:0042538 IMP hyperosmotic salinity response
GO:0043014 IEA alpha-tubulin binding
GO:0043622 IEA cortical microtubule organization
GO:0046785 IEA microtubule polymerization
GO:0047484 IMP regulation of response to osmotic stress
GO:0048487 IEA beta-tubulin binding
GO:0051015 IEA actin filament binding
GO:0070509 IDA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0071470 IMP cellular response to osmotic stress
GO:0071476 IDA cellular hypotonic response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261740 TRPV4-001 protein_coding Homo_sapiens 0 3158
ENST00000310522 TRPV1-006 protein_coding Homo_sapiens 0 206
ENST00000399756 TRPV1-003 protein_coding Homo_sapiens 0 206
ENST00000399759 TRPV1-002 protein_coding Homo_sapiens 0 206
ENST00000418703 TRPV4-006 protein_coding Homo_sapiens 0 3151
ENST00000425167 TRPV1-005 protein_coding Homo_sapiens 0 206
ENST00000536838 TRPV4-005 protein_coding Homo_sapiens 0 3000
ENST00000537083 TRPV4-003 protein_coding Homo_sapiens 0 1594
ENST00000538125 TRPV4-007 nonsense_mediated_decay Homo_sapiens 0 1995
ENST00000541794 TRPV4-004 protein_coding Homo_sapiens 0 2194
ENST00000544971 TRPV4-002 protein_coding Homo_sapiens 0 1594
ENST00000571088 TRPV1-001 protein_coding Homo_sapiens 0 206
ENST00000572705 TRPV1-002 protein_coding Homo_sapiens 0 206
ENST00000574085 TRPV1-007 retained_intron Homo_sapiens 0 206
ENST00000576351 TRPV1-004 protein_coding Homo_sapiens 0 206

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