C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112219 Trpv4-006 ENSMUSG00000014158 10090 - 5:114622653-114644899 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000112219
Transcript ID Placenta
ENSMUST00000112219 0.395±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JO CIL_0001JO_0003 CGP 5:114568016-114658421
CIL_00062E CIL_00062E_0003 CGP 5:114622152-114690984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005034 IDA osmosensor activity
GO:0005262 IDA calcium channel activity
GO:0005886 IDA plasma membrane
GO:0005929 IDA cilium
GO:0006970 IDA response to osmotic stress
GO:0007231 IDA osmosensory signaling pathway
GO:0016021 IEA integral component of membrane
GO:0030103 IMP vasopressin secretion
GO:0042538 IMP hyperosmotic salinity response
GO:0047484 IMP regulation of response to osmotic stress
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261740 TRPV4-001 protein_coding Homo_sapiens 0 1594
ENST00000310522 TRPV1-006 protein_coding Homo_sapiens 0 206
ENST00000399756 TRPV1-003 protein_coding Homo_sapiens 0 206
ENST00000399759 TRPV1-002 protein_coding Homo_sapiens 0 206
ENST00000418703 TRPV4-006 protein_coding Homo_sapiens 0 1594
ENST00000425167 TRPV1-005 protein_coding Homo_sapiens 0 206
ENST00000536838 TRPV4-005 protein_coding Homo_sapiens 0 1594
ENST00000537083 TRPV4-003 protein_coding Homo_sapiens 0 1962
ENST00000538125 TRPV4-007 nonsense_mediated_decay Homo_sapiens 0 1160
ENST00000541794 TRPV4-004 protein_coding Homo_sapiens 0 1594
ENST00000544971 TRPV4-002 protein_coding Homo_sapiens 0 2743
ENST00000571088 TRPV1-001 protein_coding Homo_sapiens 0 206
ENST00000572705 TRPV1-002 protein_coding Homo_sapiens 0 206
ENST00000574085 TRPV1-007 retained_intron Homo_sapiens 0 206
ENST00000576351 TRPV1-004 protein_coding Homo_sapiens 0 206

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