C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538125 TRPV4-007 ENSG00000111199 9606 - 12:109783558-109833401 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyENST00000538125
Transcript ID Bladder Breast Kidney
ENST00000538125 0.394±0.00 0.212±0.00 0.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JO CIL_0001JO_0002 CGP 12:109714228-109833401
CIL_00062E CIL_00062E_0002 CGP 12:109783085-109880488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071968 Trpv4-001 protein_coding Mus_musculus 0 1995
ENSMUST00000112225 Trpv4-002 protein_coding Mus_musculus 0 1991
ENSMUST00000112217 Trpv4-007 protein_coding Mus_musculus 0 1332
ENSMUST00000133019 Trpv4-004 retained_intron Mus_musculus 0 1208
ENSMUST00000112219 Trpv4-006 protein_coding Mus_musculus 0 1160
ENSMUST00000112222 Trpv4-005 protein_coding Mus_musculus 0 1160
ENSMUST00000141828 Trpv4-003 processed_transcript Mus_musculus 0 846
ENSMUST00000138853 Trpv1-004 protein_coding Mus_musculus 0 198
ENSMUST00000108470 Trpv1-003 protein_coding Mus_musculus 0 198
ENSMUST00000006106 Trpv1-002 protein_coding Mus_musculus 0 198
ENSMUST00000102526 Trpv1-001 protein_coding Mus_musculus 0 198

Loading