C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006G1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072954-ENSG00000188039 CGP 9606 19:16661127-16817963
GeneTranscriptPositionBiotype
ENSG00000072954 (TMEM38A)
transmembrane protein 38A 		ENST00000187762 (TMEM38A-001) 16661127-16690029 protein_coding
ENST00000595452 (TMEM38A-002) 16661242-16680937 retained_intron
ENST00000599479 (TMEM38A-003) 16661261-16689006 protein_coding
ENSG00000188039 (NWD1)
NACHT and WD repeat domain containing 1 		ENST00000379808 (NWD1-201) 16731167-16817963 protein_coding
ENST00000438489 (NWD1-003) 16731195-16816726 nonsense_mediated_decay
ENST00000518676 (NWD1-002) 16719976-16817953 nonsense_mediated_decay
ENST00000524140 (NWD1-001) 16719980-16817963 protein_coding
ENST00000549814 (NWD1-006) 16720049-16817123 protein_coding
ENST00000552788 (NWD1-005) 16731198-16817598 protein_coding
ENSG00000269799 (CTD-2538G9.6)
 ENST00000601661 (CTD-2538G9.6-001) 16801426-16801714 sense_intronic
CIL_0006G1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031791-ENSMUSG00000048148 CGP 10090 8:72572103-72714746
GeneTranscriptPositionBiotype
ENSMUSG00000031791 (Tmem38a)
transmembrane protein 38A 		ENSMUST00000034244 (Tmem38a-201) 72572103-72587282 protein_coding
ENSMUSG00000048148 (Nwd1)
NACHT and WD repeat domain containing 1 		ENSMUST00000093427 (Nwd1-201) 72646711-72714738 protein_coding
ENSMUST00000160443 (Nwd1-007) 72653486-72708072 nonsense_mediated_decay
ENSMUST00000160912 (Nwd1-005) 72657086-72708033 protein_coding
ENSMUST00000161254 (Nwd1-002) 72646771-72714746 protein_coding
ENSMUST00000161386 (Nwd1-003) 72646711-72693713 protein_coding
ENSMUST00000161557 (Nwd1-001) 72646722-72708002 nonsense_mediated_decay
ENSMUST00000162248 (Nwd1-006) 72681791-72693110 processed_transcript
ENSMUST00000163026 (Nwd1-004) 72657086-72708033 protein_coding
ENSMUSG00000093276 (Gm26237)
predicted gene, 26237 		ENSMUST00000175535 (Gm26237-201) 72684314-72684438 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006G1_0001ENSG00000072954ENST00000187762ENST00000595452ENST00000599479ENSG00000188039ENST00000379808ENST00000438489ENST00000518676ENST00000524140ENST00000549814ENST00000552788ENSG00000269799ENST00000601661CIL_0006G1_0002ENSMUSG00000031791ENSMUST00000034244ENSMUSG00000048148ENSMUST00000093427ENSMUST00000160443ENSMUST00000160912ENSMUST00000161254ENSMUST00000161386ENSMUST00000161557ENSMUST00000162248ENSMUST00000163026ENSMUSG00000093276ENSMUST00000175535
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006G1_0001ENSG00000072954ENST00000187762ENST00000595452ENST00000599479ENSG00000188039ENST00000379808ENST00000438489ENST00000518676ENST00000549814ENST00000552788ENSG00000269799ENST00000601661CIL_0006G1_0002ENSMUSG00000031791ENSMUST00000034244ENSMUSG00000048148ENSMUST00000093427ENSMUST00000160443ENSMUST00000160912ENSMUST00000161254ENSMUST00000161386ENSMUST00000161557ENSMUST00000162248ENSMUST00000163026ENSMUSG00000093276ENSMUST00000175535
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072954 ENST00000187762 0.676±0.00 1.460±0.00 0.447±0.00 7.135±0.65 2.895±2.61 0.933±0.89 5.355±3.27 3.348±2.14 1.255±1.02 1.611±0.00 92.859±43.33 1.468±1.17 0.614±0.35 3.139±2.31
ENST00000595452 N/A N/A 0.744±0.00 N/A N/A N/A N/A N/A 0.553±0.00 1.064±0.00 N/A 1.206±0.92 0.376±0.00 0.507±0.00
ENST00000599479 0.830±0.00 N/A N/A N/A N/A N/A N/A N/A 2.621±0.00 N/A N/A N/A N/A N/A
ENSG00000188039 ENST00000379808 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A 0.376±0.00 N/A N/A 0.034±0.00 N/A
ENST00000438489 N/A N/A N/A 0.713±0.36 N/A 0.045±0.00 N/A N/A N/A N/A N/A 0.470±0.46 0.010±0.00 0.656±0.23
ENST00000518676 N/A 0.116±0.00 0.031±0.00 N/A 0.066±0.03 0.014±0.00 0.022±0.02 0.128±0.00 N/A N/A N/A N/A N/A N/A
ENST00000524140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549814 N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A
ENST00000552788 0.094±0.00 N/A N/A N/A N/A N/A N/A 0.023±0.00 0.021±0.00 N/A 0.053±0.00 N/A N/A N/A
ENSG00000269799 ENST00000601661 0.148±0.00 0.464±0.00 N/A 0.243±0.00 0.078±0.00 0.073±0.00 0.142±0.00 0.233±0.00 0.338±0.00 N/A N/A 5.292±0.00 N/A 0.487±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031791 ENSMUST00000034244 6.026±2.77 1.567±0.37 30.935±0.96 14.952±7.64 42.199±46.85 4.349±0.88 193.652±8.99 9.694±3.20 1.085±0.23 18.046±8.23 548.773±16.77 8.817±2.95 1.893±0.88 0.816±0.31
ENSMUSG00000048148 ENSMUST00000093427 0.058±0.00 N/A N/A 0.459±0.29 0.013±0.01 N/A 0.020±0.00 N/A 0.004±0.00 0.282±0.11 0.211±0.10 0.159±0.02 N/A 0.132±0.06
ENSMUST00000160443 0.077±0.00 N/A N/A N/A 0.017±0.01 0.161±0.00 N/A 0.044±0.01 0.002±0.00 N/A N/A N/A N/A N/A
ENSMUST00000160912 N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.009±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161254 0.018±0.00 0.038±0.01 N/A N/A 0.027±0.00 0.021±0.00 0.006±0.00 0.015±0.00 0.009±0.00 N/A 0.159±0.04 0.575±0.28 N/A N/A
ENSMUST00000161386 0.051±0.03 0.043±0.01 N/A N/A N/A 0.120±0.00 0.030±0.00 0.017±0.01 N/A 0.161±0.00 0.234±0.15 0.420±0.09 N/A N/A
ENSMUST00000161557 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A
ENSMUST00000162248 N/A 0.134±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163026 N/A N/A N/A N/A N/A 0.037±0.00 0.037±0.02 N/A N/A 0.153±0.03 N/A 0.237±0.00 N/A 0.174±0.05
ENSMUSG00000093276 ENSMUST00000175535 N/A N/A N/A 6.048±0.00 N/A N/A 1096.030±0.00 N/A N/A 486.217±0.00 N/A N/A N/A N/A

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