C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13428
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117540 Gm13428-001 ENSMUSG00000081496 10090 - 2:36137339-36137703 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000117540
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000117540 0.385±0.19 0.037±0.00 0.040±0.00 0.219±0.00 0.340±0.00 0.189±0.00 0.049±0.00 0.654±0.44 0.074±0.02 2.091±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N9 CIL_0006N9_0002 CGP 2:36116079-36190647
CIL_0006NA CIL_0006NA_0002 CGP 2:36136389-36252272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 2.99878e-43 180
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 3e-39 165
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 5e-33 145
ENST00000434254 AC008072.1-001 processed_pseudogene Homo_sapiens 2e-18 97
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 3e-35 152
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 1e-38 163
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 1e-28 130
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 5e-39 165
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 1e-39 167
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 9e-39 165
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 5e-39 165

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