C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006V1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167434-ENSG00000170832 CGP 9606 17:60149936-60422470
GeneTranscriptPositionBiotype
ENSG00000141371 (C17orf64)
chromosome 17 open reading frame 64 		ENST00000269127 (C17orf64-001) 60422509-60431421 protein_coding
ENST00000461535 (C17orf64-005) 60392429-60425871 protein_coding
ENST00000464714 (C17orf64-003) 60422535-60426408 retained_intron
ENST00000474834 (C17orf64-002) 60421742-60426794 protein_coding
ENSG00000167434 (CA4)
carbonic anhydrase IV 		ENST00000300900 (CA4-001) 60149936-60159540 protein_coding
ENST00000585705 (CA4-004) 60149942-60156952 retained_intron
ENST00000586876 (CA4-002) 60149942-60170899 nonsense_mediated_decay
ENST00000587265 (CA4-006) 60158108-60158964 protein_coding
ENST00000590203 (CA4-005) 60157732-60159546 protein_coding
ENST00000591725 (CA4-003) 60149942-60157542 protein_coding
ENSG00000170832 (USP32)
ubiquitin specific peptidase 32 		ENST00000300896 (USP32-001) 60179094-60392134 protein_coding
ENST00000393003 (USP32-003) 60249058-60391975 protein_coding
ENST00000585720 (USP32-011) 60207729-60208813 retained_intron
ENST00000586238 (USP32-012) 60183186-60185933 retained_intron
ENST00000586881 (USP32-006) 60301599-60305228 processed_transcript
ENST00000587651 (USP32-009) 60219571-60226149 retained_intron
ENST00000588898 (USP32-014) 60294683-60422470 protein_coding
ENST00000589335 (USP32-007) 60226183-60392230 protein_coding
ENST00000589552 (USP32-010) 60219636-60226231 nonsense_mediated_decay
ENST00000589761 (USP32-005) 60301450-60391928 retained_intron
ENST00000590133 (USP32-002) 60209417-60392408 protein_coding
ENST00000590297 (USP32-015) 60421208-60422337 protein_coding
ENST00000591768 (USP32-008) 60213581-60226063 protein_coding
ENST00000592339 (USP32-004) 60179105-60256700 protein_coding
ENST00000593071 (USP32-013) 60179111-60181673 protein_coding
ENSG00000241157 (RP11-3K24.1)
 ENST00000475274 (RP11-3K24.1-001) 60245288-60245647 processed_pseudogene
ENSG00000252577 (SCARNA20)
small Cajal body-specific RNA 20 		ENST00000516768 (SCARNA20-201) 60231516-60231646 snoRNA
ENSG00000266960 (FAM106DP)
family with sequence similarity 106, member D, pseudogene 		ENST00000586416 (FAM106DP-001) 60173322-60173822 unprocessed_pseudogene
ENSG00000271626 (RP11-3K24.2)
 ENST00000604179 (RP11-3K24.2-001) 60315834-60316215 processed_pseudogene
ENSG00000275562 (RP11-3K24.3)
 ENST00000613765 (RP11-3K24.3-001) 60256720-60258411 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006V1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000805-ENSMUSG00000000804 CGP 10090 11:84957786-85140161
GeneTranscriptPositionBiotype
ENSMUSG00000000804 (Usp32)
ubiquitin specific peptidase 32 		ENSMUST00000000821 (Usp32-003) 84985647-85029135 nonsense_mediated_decay
ENSMUST00000108075 (Usp32-001) 84984442-85140038 protein_coding
ENSMUST00000172515 (Usp32-010) 85036488-85042680 nonsense_mediated_decay
ENSMUST00000172595 (Usp32-008) 85100224-85139968 processed_transcript
ENSMUST00000172950 (Usp32-006) 85050192-85053667 retained_intron
ENSMUST00000173156 (Usp32-004) 84986270-84988683 protein_coding
ENSMUST00000173271 (Usp32-009) 85081176-85140161 processed_transcript
ENSMUST00000174602 (Usp32-005) 85027161-85040038 protein_coding
ENSMUST00000174809 (Usp32-007) 85103680-85139929 retained_intron
ENSMUSG00000000805 (Car4)
carbonic anhydrase 4 		ENSMUST00000103194 (Car4-001) 84957788-84966044 protein_coding
ENSMUST00000108076 (Car4-005) 84964347-84966044 protein_coding
ENSMUST00000127827 (Car4-002) 84958104-84964228 nonsense_mediated_decay
ENSMUST00000138331 (Car4-006) 84957811-84961918 processed_transcript
ENSMUST00000139416 (Car4-004) 84957786-84962555 retained_intron
ENSMUST00000150596 (Car4-003) 84957825-84964563 nonsense_mediated_decay
ENSMUSG00000082806 (Rpl13-ps1)
ribosomal protein L13, pseudogene 1 		ENSMUST00000121801 (Rpl13-ps1-001) 85111126-85111793 processed_pseudogene
ENSMUSG00000082917 (Gm11440)
predicted gene 11440 		ENSMUST00000121509 (Gm11440-001) 85072469-85072995 processed_pseudogene
ENSMUSG00000083876 (Gm11439)
predicted gene 11439 		ENSMUST00000118598 (Gm11439-001) 85095141-85095549 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V1_0001ENSG00000141371ENST00000269127ENST00000461535ENST00000464714ENST00000474834ENSG00000167434ENST00000300900ENST00000585705ENST00000586876ENST00000587265ENST00000590203ENST00000591725ENSG00000170832ENST00000300896ENST00000393003ENST00000585720ENST00000586238ENST00000586881ENST00000587651ENST00000588898ENST00000589335ENST00000589552ENST00000589761ENST00000590133ENST00000590297ENST00000591768ENST00000592339ENST00000593071ENSG00000241157ENST00000475274ENSG00000252577ENST00000516768ENSG00000266960ENST00000586416ENSG00000271626ENST00000604179ENSG00000275562ENST00000613765CIL_0006V1_0002ENSMUSG00000000804ENSMUST00000000821ENSMUST00000108075ENSMUST00000172515ENSMUST00000172595ENSMUST00000172950ENSMUST00000173156ENSMUST00000173271ENSMUST00000174602ENSMUST00000174809ENSMUSG00000000805ENSMUST00000103194ENSMUST00000108076ENSMUST00000127827ENSMUST00000138331ENSMUST00000139416ENSMUST00000150596ENSMUSG00000082806ENSMUST00000121801ENSMUSG00000082917ENSMUST00000121509ENSMUSG00000083876ENSMUST00000118598
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V1_0001ENSG00000141371ENST00000269127ENST00000461535ENST00000474834ENSG00000167434ENST00000300900ENST00000585705ENST00000586876ENST00000587265ENST00000590203ENSG00000170832ENST00000300896ENST00000393003ENST00000590133ENST00000592339ENST00000593071ENSG00000241157ENST00000475274ENSG00000252577ENST00000516768ENSG00000266960ENST00000586416ENSG00000271626ENST00000604179ENSG00000275562ENST00000613765CIL_0006V1_0002ENSMUSG00000000804ENSMUST00000000821ENSMUST00000108075ENSMUST00000173156ENSMUSG00000000805ENSMUST00000103194ENSMUST00000108076ENSMUST00000127827ENSMUST00000138331ENSMUST00000139416ENSMUST00000150596ENSMUSG00000082806ENSMUST00000121801ENSMUSG00000082917ENSMUST00000121509ENSMUSG00000083876ENSMUST00000118598
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141371 ENST00000269127 0.113±0.00 0.233±0.00 N/A 0.024±0.00 0.301±0.00 0.021±0.00 N/A N/A N/A N/A N/A 0.089±0.00 N/A 75.130±30.26
ENST00000461535 N/A 0.678±0.00 N/A N/A N/A N/A N/A 0.658±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474834 0.224±0.00 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000167434 ENST00000300900 162.610±0.00 4.455±0.00 N/A 3.731±1.63 18.973±18.40 19.381±0.00 6.679±5.44 20.418±0.00 0.369±0.00 23.033±20.47 1.363±0.00 2.231±1.95 8.265±5.46 1.869±1.48
ENST00000585705 N/A N/A 1.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586876 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A
ENST00000587265 N/A N/A N/A N/A N/A N/A 0.423±0.00 N/A 0.088±0.00 N/A N/A 0.079±0.00 N/A N/A
ENST00000590203 37.850±0.00 1.621±0.00 N/A 1.412±0.45 12.109±0.00 N/A N/A N/A N/A 6.590±5.52 1.119±0.00 N/A N/A N/A
ENST00000591725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170832 ENST00000300896 2.518±0.00 1.719±0.00 2.095±0.00 3.104±1.57 1.720±0.60 1.357±0.78 2.373±0.00 1.276±0.00 1.099±0.57 3.795±0.29 3.045±0.00 2.613±0.80 2.275±1.60 25.071±9.29
ENST00000393003 N/A N/A N/A N/A N/A N/A 0.831±0.00 1.126±0.00 N/A N/A N/A N/A N/A N/A
ENST00000585720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590133 N/A N/A N/A 2.821±0.00 2.055±0.00 N/A N/A N/A 3.934±0.00 3.790±0.00 N/A 3.100±0.00 N/A N/A
ENST00000590297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592339 N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00 N/A N/A 0.621±0.00 0.659±0.17 N/A
ENST00000593071 N/A 6.281±0.00 N/A N/A 4.050±0.00 5.661±0.00 N/A 4.537±1.16 2.525±0.00 N/A N/A N/A N/A 32.011±0.00
ENSG00000241157 ENST00000475274 0.076±0.00 0.368±0.00 N/A 0.162±0.00 N/A N/A 0.072±0.00 N/A 0.928±0.57 0.121±0.00 0.035±0.00 0.283±0.10 0.116±0.05 0.503±0.00
ENSG00000252577 ENST00000516768 1.167±0.00 1.994±0.00 N/A 1.183±0.00 N/A 1.479±0.00 21.417±0.00 17.275±0.00 N/A 64.482±0.00 187.696±0.00 26.642±25.77 N/A 1.177±0.47
ENSG00000266960 ENST00000586416 N/A N/A N/A N/A N/A N/A N/A 1.615±0.00 N/A 1.276±0.00 N/A N/A N/A 0.238±0.00
ENSG00000271626 ENST00000604179 N/A 0.154±0.00 N/A 0.079±0.00 N/A 0.173±0.00 N/A 0.850±0.00 N/A N/A N/A 1.673±0.00 N/A N/A
ENSG00000275562 ENST00000613765 0.034±0.00 N/A 0.294±0.00 0.017±0.00 N/A N/A N/A N/A 0.398±0.00 0.338±0.21 0.046±0.00 0.177±0.14 N/A 0.049±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000804 ENSMUST00000000821 1.592±0.00 0.657±0.07 2.794±0.27 9.394±6.32 1.092±0.26 1.111±0.46 0.841±0.13 1.386±0.22 4.347±3.16 1.292±0.00 0.405±0.00 2.256±1.58 5.974±3.38 7.402±2.47
ENSMUST00000108075 3.108±0.67 1.729±0.45 3.878±0.23 8.432±2.30 1.629±0.37 1.840±0.45 1.912±0.11 2.369±1.04 5.877±5.78 3.572±0.86 1.771±0.23 3.387±2.10 6.725±2.51 15.724±4.31
ENSMUST00000172515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.315±0.00
ENSMUST00000173271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000000805 ENSMUST00000103194 16.894±12.01 2.436±0.50 0.279±0.13 4.012±4.70 6.440±1.76 300.715±15.07 9.313±1.10 42.295±1.59 0.089±0.08 80.739±4.01 2.399±0.94 0.898±0.68 199.892±72.79 1.485±0.54
ENSMUST00000108076 N/A N/A N/A 17.333±0.00 N/A N/A N/A N/A 0.033±0.02 N/A N/A 0.596±0.04 220.450±113.63 3.781±0.00
ENSMUST00000127827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.391±0.00 N/A N/A
ENSMUST00000138331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.441±0.03 N/A N/A
ENSMUST00000139416 N/A 0.761±0.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150596 N/A N/A 0.117±0.00 36.892±0.00 N/A N/A N/A N/A 0.021±0.00 N/A N/A 0.755±0.00 369.030±0.00 16.798±0.00
ENSMUSG00000082806 ENSMUST00000121801 0.133±0.07 0.517±0.27 0.114±0.01 0.504±0.18 0.413±0.19 0.185±0.14 0.144±0.02 0.164±0.03 0.450±0.27 0.476±0.03 0.107±0.03 0.716±0.54 0.216±0.07 0.454±0.09
ENSMUSG00000082917 ENSMUST00000121509 0.167±0.09 0.210±0.06 0.315±0.04 0.428±0.04 0.418±0.24 0.222±0.05 0.286±0.03 0.166±0.10 0.745±0.52 0.176±0.02 N/A 0.468±0.21 0.289±0.01 0.318±0.16
ENSMUSG00000083876 ENSMUST00000118598 0.154±0.02 N/A 0.097±0.00 0.280±0.13 0.428±0.00 0.249±0.00 N/A 0.172±0.07 0.583±0.23 0.369±0.07 N/A 0.781±0.65 0.310±0.06 0.252±0.12

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