C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121801 Rpl13-ps1-001 ENSMUSG00000082806 10090 - 11:85111126-85111793 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121801 0.133±0.07 0.517±0.27 0.114±0.01 0.504±0.18 0.413±0.19 0.185±0.14 0.144±0.02 0.164±0.03 0.450±0.27 0.476±0.03 0.107±0.03 0.716±0.54 0.216±0.07 0.454±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006V1 CIL_0006V1_0002 CGP 11:84957786-85140161
CIL_000702 CIL_000702_0002 CGP 11:84984442-85181145

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311528 RPL13-001 protein_coding Homo_sapiens 0 523
ENST00000393099 RPL13-002 protein_coding Homo_sapiens 0 523
ENST00000399461 RPL13-003 retained_intron Homo_sapiens 0 518
ENST00000412023 RPL13P5-002 processed_transcript Homo_sapiens 0.000000000000009 86
ENST00000440687 RPL13P2-001 processed_pseudogene Homo_sapiens 0 366
ENST00000441655 RPL13P5-001 transcribed_processed_pseudogene Homo_sapiens 0.000000000000004 86
ENST00000452368 RPL13-015 protein_coding Homo_sapiens 3e-39 167
ENST00000467736 RPL13-006 protein_coding Homo_sapiens 0 287
ENST00000491523 RPL13-005 retained_intron Homo_sapiens 0 388
ENST00000563270 RPL13-016 protein_coding Homo_sapiens 0 494
ENST00000565571 RPL13-018 retained_intron Homo_sapiens 0 339
ENST00000567815 RPL13-009 protein_coding Homo_sapiens 0 523

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