C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006VU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115850-ENSG00000076003 CGP 9606 2:135787840-135876426
GeneTranscriptPositionBiotype
ENSG00000076003 (MCM6)
minichromosome maintenance complex component 6 		ENST00000264156 (MCM6-001) 135839626-135876426 protein_coding
ENST00000483902 (MCM6-002) 135848156-135851945 retained_intron
ENST00000492091 (MCM6-003) 135844608-135865051 processed_transcript
ENSG00000115850 (LCT)
lactase 		ENST00000264162 (LCT-001) 135787840-135837180 protein_coding
ENST00000452974 (LCT-002) 135794337-135812959 nonsense_mediated_decay
ENSG00000226806 (AC011893.3)
 ENST00000437007 (AC011893.3-001) 135820191-135823087 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006VU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026354-ENSMUSG00000026355 CGP 10090 1:128284756-128359664
GeneTranscriptPositionBiotype
ENSMUSG00000026354 (Lct)
lactase 		ENSMUST00000073490 (Lct-001) 128284756-128328318 protein_coding
ENSMUST00000162067 (Lct-002) 128287572-128292264 retained_intron
ENSMUSG00000026355 (Mcm6)
minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) 		ENSMUST00000027601 (Mcm6-001) 128331590-128359664 protein_coding
ENSMUST00000188755 (Mcm6-002) 128341023-128343463 retained_intron
ENSMUST00000190495 (Mcm6-004) 128331593-128359647 protein_coding
ENSMUST00000191454 (Mcm6-003) 128339468-128346042 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VU_0001ENSG00000076003ENST00000264156ENST00000483902ENST00000492091ENSG00000115850ENST00000264162ENST00000452974ENSG00000226806ENST00000437007CIL_0006VU_0002ENSMUSG00000026354ENSMUST00000073490ENSMUST00000162067ENSMUSG00000026355ENSMUST00000027601ENSMUST00000188755ENSMUST00000190495ENSMUST00000191454
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VU_0001ENSG00000076003ENST00000264156ENST00000492091ENSG00000115850ENST00000264162ENST00000452974ENSG00000226806ENST00000437007CIL_0006VU_0002ENSMUSG00000026354ENSMUST00000073490ENSMUST00000162067ENSMUSG00000026355ENSMUST00000027601ENSMUST00000190495ENSMUST00000191454
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076003 ENST00000264156 2.111±0.00 8.101±0.00 0.478±0.00 2.950±1.69 2.166±0.67 2.045±0.00 0.828±0.67 3.704±0.00 0.583±0.00 3.540±0.00 1.303±0.22 11.799±8.20 9.764±6.18 9.927±2.73
ENST00000483902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492091 N/A N/A N/A N/A 2.896±0.00 N/A 0.358±0.00 N/A 1.297±0.58 4.356±0.00 2.232±0.00 N/A N/A N/A
ENSG00000115850 ENST00000264162 N/A N/A N/A 0.003±0.00 0.008±0.00 0.035±0.00 0.031±0.00 N/A N/A N/A 0.015±0.00 0.014±0.00 N/A 0.052±0.01
ENST00000452974 N/A 0.026±0.00 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.210±0.00 0.008±0.00 N/A 0.040±0.00
ENSG00000226806 ENST00000437007 0.019±0.00 0.089±0.00 N/A 0.020±0.00 N/A 0.029±0.00 N/A 0.044±0.00 0.049±0.00 0.080±0.06 N/A 0.026±0.00 0.014±0.00 0.041±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026354 ENSMUST00000073490 0.023±0.02 0.022±0.01 0.050±0.00 0.132±0.11 0.026±0.01 0.032±0.02 0.011±0.00 0.017±0.00 0.045±0.05 0.022±0.00 0.008±0.00 0.125±0.06 0.058±0.02 0.100±0.00
ENSMUST00000162067 0.076±0.00 N/A N/A N/A 0.168±0.00 0.092±0.00 N/A N/A N/A 0.072±0.00 0.052±0.00 0.118±0.04 N/A N/A
ENSMUSG00000026355 ENSMUST00000027601 8.565±7.36 5.113±0.47 6.828±1.48 12.848±8.31 7.518±1.62 6.366±1.04 1.473±0.10 3.976±1.08 44.416±48.44 5.214±0.58 0.586±0.17 13.687±5.05 29.634±16.36 4.394±0.72
ENSMUST00000188755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190495 0.394±0.05 N/A 0.690±0.12 1.975±0.00 1.421±0.19 0.837±0.26 0.268±0.11 0.340±0.00 0.199±0.06 0.776±0.16 0.105±0.03 1.853±0.41 0.445±0.00 0.440±0.10
ENSMUST00000191454 N/A N/A N/A 2.102±0.00 N/A N/A N/A N/A N/A N/A N/A 28.898±0.00 29.109±20.00 N/A

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