C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11662
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121389 Gm11662-001 ENSMUSG00000083748 10090 - 11:104679105-104680655 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000121389
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000121389 0.116±0.10 0.509±0.00 0.066±0.00 0.217±0.08 0.152±0.00 0.032±0.00 0.168±0.08 0.090±0.03 0.572±0.38 0.062±0.03 0.265±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0002 VISTA 11:104342398-104943585
CIL_0006XZ CIL_0006XZ_0002 CGP 11:104608000-104753962

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 952
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 948
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 765
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 811
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 822
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 361
ENST00000417878 RPL3P7-001 processed_pseudogene Homo_sapiens 0 848
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 2e-34 150
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 580
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 817
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 804
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 728
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 636
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 802
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 833
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 643
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 802
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 806
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 6e-33 145
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 697
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 1e-32 145
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 798
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 195
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 712
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 329

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