C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006ZF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159267-ENSG00000183145 CGP 9606 21:36750888-37019659
GeneTranscriptPositionBiotype
ENSG00000159267 (HLCS)
holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 		ENST00000336648 (HLCS-001) 36750888-36990236 protein_coding
ENST00000399120 (HLCS-002) 36751192-36966473 protein_coding
ENST00000419461 (HLCS-005) 36937185-36966639 protein_coding
ENST00000427746 (HLCS-004) 36937214-36990224 protein_coding
ENST00000448340 (HLCS-003) 36937168-36980628 protein_coding
ENST00000482273 (HLCS-006) 36896570-36930417 processed_transcript
ENST00000612277 (HLCS-201) 36750888-36980964 protein_coding
ENSG00000183145 (RIPPLY3)
ripply transcriptional repressor 3 		ENST00000329553 (RIPPLY3-001) 37006563-37019659 protein_coding
ENST00000485272 (RIPPLY3-003) 37006150-37019659 processed_transcript
ENST00000490393 (RIPPLY3-002) 37006202-37019659 processed_transcript
ENSG00000199806 (RNA5SP491)
RNA, 5S ribosomal pseudogene 491 		ENST00000362936 (RNA5SP491-201) 36851911-36852028 rRNA
ENSG00000215734 (MRPL20P1)
mitochondrial ribosomal protein L20 pseudogene 1 		ENST00000400819 (MRPL20P1-001) 36994643-36995075 processed_pseudogene
ENSG00000237646 (HLCS-IT1)
HLCS intronic transcript 1 (non-protein coding) 		ENST00000434195 (HLCS-IT1-001) 36803984-36806284 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0006ZF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040820-ENSMUSG00000022941 CGP 10090 16:94129195-94336935
GeneTranscriptPositionBiotype
ENSMUSG00000022941 (Ripply3)
ripply3 homolog (zebrafish) 		ENSMUST00000023660 (Ripply3-001) 94328420-94336935 protein_coding
ENSMUSG00000040820 (Hlcs)
holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) 		ENSMUST00000099512 (Hlcs-201) 94129306-94287856 protein_coding
ENSMUST00000163193 (Hlcs-202) 94129195-94313563 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ZF_0001ENSG00000159267ENST00000336648ENST00000399120ENST00000419461ENST00000427746ENST00000448340ENST00000482273ENST00000612277ENSG00000183145ENST00000329553ENST00000485272ENST00000490393ENSG00000199806ENST00000362936ENSG00000215734ENST00000400819ENSG00000237646ENST00000434195CIL_0006ZF_0002ENSMUSG00000022941ENSMUST00000023660ENSMUSG00000040820ENSMUST00000099512ENSMUST00000163193
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ZF_0001ENSG00000159267ENST00000336648ENST00000399120ENST00000612277ENSG00000183145ENST00000329553ENST00000485272ENST00000490393ENSG00000199806ENST00000362936ENSG00000215734ENST00000400819ENSG00000237646ENST00000434195CIL_0006ZF_0002ENSMUSG00000022941ENSMUST00000023660ENSMUSG00000040820ENSMUST00000099512ENSMUST00000163193
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159267 ENST00000336648 N/A N/A N/A 0.548±0.02 0.302±0.00 0.323±0.00 0.597±0.00 2.620±0.00 N/A 0.385±0.00 0.389±0.00 2.583±0.96 0.362±0.00 1.638±0.17
ENST00000399120 0.482±0.00 1.566±0.00 N/A 0.374±0.00 1.181±0.15 0.194±0.00 0.386±0.04 N/A 0.690±0.12 0.424±0.02 N/A 0.687±0.00 N/A N/A
ENST00000419461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612277 0.283±0.00 N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183145 ENST00000329553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.830±0.29 0.359±0.00 N/A
ENST00000485272 N/A N/A N/A N/A 0.074±0.00 N/A N/A 0.176±0.00 N/A N/A N/A N/A N/A 0.284±0.00
ENST00000490393 0.078±0.00 0.255±0.00 N/A 0.199±0.00 0.245±0.00 0.062±0.00 0.396±0.00 0.157±0.00 0.125±0.00 0.308±0.00 0.953±0.00 0.079±0.06 0.141±0.09 0.089±0.00
ENSG00000199806 ENST00000362936 N/A N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215734 ENST00000400819 N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00
ENSG00000237646 ENST00000434195 0.119±0.00 0.061±0.00 N/A 0.067±0.00 0.219±0.09 N/A N/A 0.506±0.00 0.027±0.00 1.588±0.00 1.531±0.00 0.188±0.10 0.070±0.00 0.352±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022941 ENSMUST00000023660 2.005±0.48 3.068±0.82 1.029±0.00 0.370±0.13 1.325±0.21 0.895±0.32 1.814±0.42 2.712±0.24 0.897±0.22 26.308±4.98 0.608±0.14 0.954±0.43 1.585±0.38 0.060±0.02
ENSMUSG00000040820 ENSMUST00000099512 2.286±0.13 N/A N/A 1.158±0.85 1.570±0.00 2.653±0.00 0.477±0.00 0.966±0.01 0.569±0.28 1.129±0.00 0.861±0.32 2.371±0.25 1.152±0.19 0.546±0.37
ENSMUST00000163193 1.949±1.76 N/A 1.414±0.07 0.432±0.30 1.424±0.82 N/A 0.780±0.31 0.583±0.17 0.511±0.26 0.959±0.35 0.851±0.35 1.812±1.19 1.229±0.62 0.480±0.26

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