C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00072Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137078-ENSG00000159884 CGP 9606 9:35649295-35661511
GeneTranscriptPositionBiotype
ENSG00000137078 (SIT1)
signaling threshold regulating transmembrane adaptor 1 		ENST00000259608 (SIT1-001) 35649295-35650940 protein_coding
ENST00000474403 (SIT1-002) 35649427-35650910 processed_transcript
ENST00000486859 (SIT1-003) 35649368-35650470 processed_transcript
ENST00000618781 (SIT1-201) 35649303-35650950 protein_coding
ENSG00000137135 (ARHGEF39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENST00000378387 (ARHGEF39-001) 35659344-35665287 protein_coding
ENST00000468876 (ARHGEF39-006) 35662967-35664828 processed_transcript
ENST00000475323 (ARHGEF39-003) 35658877-35665192 nonsense_mediated_decay
ENST00000488918 (ARHGEF39-005) 35661838-35662644 processed_transcript
ENST00000490638 (ARHGEF39-004) 35658875-35675866 nonsense_mediated_decay
ENST00000490970 (ARHGEF39-002) 35661519-35665187 processed_transcript
ENSG00000159884 (CCDC107)
coiled-coil domain containing 107 		ENST00000327351 (CCDC107-003) 35658317-35661177 protein_coding
ENST00000378406 (CCDC107-004) 35658314-35661187 protein_coding
ENST00000378407 (CCDC107-002) 35658304-35661186 protein_coding
ENST00000378409 (CCDC107-201) 35658290-35661499 protein_coding
ENST00000421582 (CCDC107-005) 35658317-35661403 protein_coding
ENST00000426546 (CCDC107-001) 35658314-35661511 protein_coding
ENSG00000269900 (RMRP)
RNA component of mitochondrial RNA processing endoribonuclease 		ENST00000602361 (RMRP-001) 35657751-35658018 lincRNA
ENSG00000277027 (RNase_MRP)
RNase MRP 		ENST00000363046 (RNase_MRP.1-201) 35657754-35658017 misc_RNA
CIL_00072Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028460-ENSMUSG00000028461 CGP 10090 4:43482081-43495921
GeneTranscriptPositionBiotype
ENSMUSG00000028460 (Sit1)
suppression inducing transmembrane adaptor 1 		ENSMUST00000030180 (Sit1-001) 43482081-43483734 protein_coding
ENSMUST00000123526 (Sit1-002) 43482187-43483222 processed_transcript
ENSMUSG00000028461 (Ccdc107)
coiled-coil domain containing 107 		ENSMUST00000030181 (Ccdc107-001) 43493362-43495921 protein_coding
ENSMUST00000107922 (Ccdc107-002) 43493389-43495921 protein_coding
ENSMUST00000127324 (Ccdc107-003) 43493377-43493810 processed_transcript
ENSMUST00000137113 (Ccdc107-005) 43493417-43495871 processed_transcript
ENSMUST00000140005 (Ccdc107-006) 43493417-43495864 processed_transcript
ENSMUST00000143073 (Ccdc107-004) 43492900-43494205 processed_transcript
ENSMUSG00000088088 (Rmrp)
RNA component of mitochondrial RNAase P 		ENSMUST00000157463 (Rmrp-201) 43492788-43493058 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072Q_0001ENSG00000137078ENST00000259608ENST00000474403ENST00000486859ENST00000618781ENSG00000137135ENST00000378387ENST00000468876ENST00000475323ENST00000488918ENST00000490638ENST00000490970ENSG00000159884ENST00000327351ENST00000378406ENST00000378407ENST00000378409ENST00000421582ENST00000426546ENSG00000269900ENST00000602361ENSG00000277027ENST00000363046CIL_00072Q_0002ENSMUSG00000028460ENSMUST00000030180ENSMUST00000123526ENSMUSG00000028461ENSMUST00000030181ENSMUST00000107922ENSMUST00000127324ENSMUST00000137113ENSMUST00000140005ENSMUST00000143073ENSMUSG00000088088ENSMUST00000157463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072Q_0001ENSG00000137078ENST00000259608ENST00000474403ENST00000486859ENST00000618781ENSG00000137135ENST00000378387ENST00000475323ENSG00000159884ENST00000327351ENST00000378409ENSG00000269900ENST00000602361ENSG00000277027ENST00000363046CIL_00072Q_0002ENSMUSG00000028460ENSMUST00000030180ENSMUST00000123526ENSMUSG00000028461ENSMUST00000030181ENSMUST00000107922ENSMUST00000127324ENSMUSG00000088088ENSMUST00000157463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137078 ENST00000259608 N/A 12.083±0.00 N/A N/A 0.291±0.00 0.087±0.04 0.098±0.00 0.166±0.00 0.130±0.00 N/A N/A 0.695±0.15 0.273±0.05 0.166±0.10
ENST00000474403 0.078±0.00 4.889±0.00 N/A 0.034±0.00 0.241±0.00 0.322±0.00 N/A N/A N/A 1.254±0.00 N/A 0.437±0.11 0.262±0.11 0.054±0.00
ENST00000486859 N/A N/A N/A N/A 0.268±0.11 0.070±0.00 N/A 0.213±0.00 0.228±0.00 0.420±0.00 N/A 0.318±0.00 0.175±0.00 0.062±0.00
ENST00000618781 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.200±0.00 N/A 0.266±0.00 0.305±0.00 N/A
ENSG00000137135 ENST00000378387 0.948±0.00 0.735±0.00 N/A N/A N/A 0.257±0.00 N/A N/A N/A 0.049±0.00 N/A 2.794±2.18 0.947±0.00 1.361±0.05
ENST00000468876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475323 3.997±0.00 3.491±0.00 0.020±0.00 1.348±0.65 11.515±0.00 10.231±0.00 3.188±0.00 1.642±1.58 2.247±0.00 4.548±0.00 3.132±2.57 3.740±0.51 3.095±1.05 3.489±0.81
ENST00000488918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159884 ENST00000327351 10.776±0.00 7.007±0.00 0.299±0.00 2.981±0.00 17.999±16.18 N/A 6.478±0.00 3.221±2.15 3.461±1.66 12.875±0.00 1.449±0.00 3.790±2.76 4.762±0.00 11.034±0.00
ENST00000378406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378409 N/A N/A N/A N/A 0.757±0.00 1.198±0.00 1.407±1.13 0.124±0.00 2.517±0.00 0.552±0.00 7.295±0.00 5.209±0.48 6.558±1.60 4.137±0.00
ENST00000421582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000269900 ENST00000602361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.525±0.00 0.099±0.01 N/A
ENSG00000277027 ENST00000363046 99.984±0.00 134.695±0.00 1395.760±0.00 1208.065±1049.45 2055.612±1950.95 1568.593±1474.10 895.643±893.71 1428.885±1393.51 1940.299±1938.63 2611.505±2601.15 867.235±865.90 1348.701±1693.80 4.664±6.22 195.147±194.66
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028460 ENSMUST00000030180 0.197±0.08 0.124±0.00 0.140±0.06 N/A 4.772±1.80 0.276±0.11 N/A 0.349±0.21 0.152±0.20 0.463±0.16 0.602±0.00 0.135±0.10 0.134±0.05 N/A
ENSMUST00000123526 N/A 0.225±0.11 N/A N/A 2.637±1.39 0.383±0.20 0.056±0.01 0.102±0.06 0.131±0.09 0.194±0.03 N/A 0.097±0.03 0.269±0.13 0.038±0.00
ENSMUSG00000028461 ENSMUST00000030181 6.190±0.34 16.274±3.43 48.543±2.02 16.403±9.08 N/A 19.594±2.26 5.551±0.90 54.686±5.46 19.165±8.50 9.739±0.12 19.469±1.74 27.091±5.43 26.292±12.22 4.752±0.00
ENSMUST00000107922 N/A N/A 15.344±3.86 N/A 1.437±0.00 N/A N/A N/A 3.232±0.00 N/A 3.154±0.00 9.918±6.29 4.246±0.00 0.971±0.00
ENSMUST00000127324 68.746±39.29 152.237±33.79 78.694±12.09 33.921±10.13 71.714±28.92 184.240±58.56 20.960±4.88 226.565±74.02 66.057±37.02 80.313±19.45 N/A 154.422±55.59 17.388±0.00 N/A
ENSMUST00000137113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088088 ENSMUST00000157463 1036.260±0.00 151.594±21.95 117.425±16.80 326.685±11.58 362.012±0.00 515.535±212.41 47.395±0.00 328.063±139.76 108.242±45.91 N/A N/A 1686.340±863.30 203.661±93.96 366.479±178.79

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