C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378387 ARHGEF39-001 ENSG00000137135 9606 - 9:35659344-35665287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLungOvaryPlacentaTestisENST00000378387
Transcript ID Adipose Adrenal Colon Lung Ovary Placenta Testis
ENST00000378387 0.948±0.00 0.735±0.00 0.257±0.00 0.049±0.00 2.794±2.18 0.947±0.00 1.361±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Q CIL_00072Q_0001 CGP 9:35649295-35661511
CIL_00072N CIL_00072N_0001 CGP 9:35658290-35675866
CIL_00072O CIL_00072O_0001 CGP 9:35658875-35681159

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005886 IDA plasma membrane
GO:0030335 IDA positive regulation of cell migration
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054538 Arhgef39-001 protein_coding Mus_musculus 0 1086
ENSMUST00000125834 Arhgef39-004 processed_transcript Mus_musculus 0 664
ENSMUST00000154905 Arhgef39-006 processed_transcript Mus_musculus 0 564
ENSMUST00000146781 Arhgef39-005 processed_transcript Mus_musculus 0 547
ENSMUST00000147124 Arhgef39-007 processed_transcript Mus_musculus 0 326
ENSMUST00000136005 Arhgef39-010 protein_coding Mus_musculus 0 326
ENSMUST00000128754 Arhgef39-002 processed_transcript Mus_musculus 0 326

Loading