C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120821 Rpl9-ps2-001 ENSMUSG00000082749 10090 + 11:46562031-46562607 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000120821
Transcript ID Placenta
ENSMUST00000120821 0.080±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000737 CIL_000737_0005 CGP 11:46524212-46589232

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 628
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 628
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 634
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 449
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 405
ENST00000439124 RPL9P18-001 processed_pseudogene Homo_sapiens 0 560
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 628
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 551
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 634
ENST00000475906 RPL9P3-001 processed_pseudogene Homo_sapiens 0 555
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 331
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 542
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 584
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 564
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 4e-18 95
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 584
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 449
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 272

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