C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070172-ENSDARG00000027899 CGP 7955 19:42253706-42376790
GeneTranscriptPositionBiotype
ENSDARG00000027899 (shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSDART00000038038 (shfm1-201) 42373066-42376790 protein_coding
ENSDARG00000070172 (slc25a13)
solute carrier family 25, member 13 		ENSDART00000102780 (slc25a13-201) 42253706-42343927 protein_coding
ENSDART00000137119 (slc25a13-002) 42324753-42343909 processed_transcript
ENSDART00000141163 (slc25a13-001) 42324753-42343909 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00078J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015112-ENSMUSG00000042541 CGP 10090 6:6041218-6578658
GeneTranscriptPositionBiotype
ENSMUSG00000015112 (Slc25a13)
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 		ENSMUST00000015256 (Slc25a13-001) 6041218-6217118 protein_coding
ENSMUST00000169197 (Slc25a13-002) 6041218-6191317 processed_transcript
ENSMUST00000177698 (Slc25a13-007) 6109181-6191317 processed_transcript
ENSMUST00000177805 (Slc25a13-008) 6041221-6191317 processed_transcript
ENSMUST00000179756 (Slc25a13-009) 6109181-6181069 processed_transcript
ENSMUST00000188130 (Slc25a13-201) 6041219-6217173 protein_coding
ENSMUST00000188414 (Slc25a13-202) 6041219-6217173 protein_coding
ENSMUST00000189611 (Slc25a13-203) 6041219-6217173 protein_coding
ENSMUSG00000042541 (Shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSMUST00000041111 (Shfm1-001) 6557294-6578658 protein_coding
ENSMUSG00000093380 (Gm20685)
predicted gene 20685 		ENSMUST00000176654 (Gm20685-001) 6483022-6508616 lincRNA
ENSMUSG00000093482 (Gm20619)
predicted gene 20619 		ENSMUST00000175814 (Gm20619-002) 6248690-6378675 lincRNA
ENSMUST00000176283 (Gm20619-001) 6248687-6364097 lincRNA
ENSMUST00000181192 (Gm20619-004) 6248718-6281135 lincRNA
ENSMUST00000181343 (Gm20619-005) 6299421-6363892 lincRNA
ENSMUST00000181633 (Gm20619-003) 6248659-6281139 lincRNA
ENSMUSG00000093658 (Gm20617)
predicted gene 20617 		ENSMUST00000177082 (Gm20617-002) 6456593-6484487 lincRNA
ENSMUST00000177332 (Gm20617-001) 6456189-6484321 lincRNA
ENSMUSG00000097175 (Gm27018)
predicted gene, 27018 		ENSMUST00000181136 (Gm27018-001) 6329998-6330222 processed_pseudogene
ENSMUSG00000097669 (Gm8649)
predicted gene 8649 		ENSMUST00000181799 (Gm8649-001) 6329762-6329994 processed_pseudogene
ENSMUSG00000097900 (Gm8652)
predicted gene 8652 		ENSMUST00000181363 (Gm8652-001) 6351304-6352267 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078J_0001ENSDARG00000027899ENSDART00000038038ENSDARG00000070172ENSDART00000102780ENSDART00000137119ENSDART00000141163CIL_00078J_0002ENSMUSG00000015112ENSMUST00000015256ENSMUST00000169197ENSMUST00000177698ENSMUST00000177805ENSMUST00000179756ENSMUST00000188130ENSMUST00000188414ENSMUST00000189611ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000093380ENSMUST00000176654ENSMUSG00000093482ENSMUST00000175814ENSMUST00000176283ENSMUST00000181192ENSMUST00000181343ENSMUST00000181633ENSMUSG00000093658ENSMUST00000177082ENSMUST00000177332ENSMUSG00000097175ENSMUST00000181136ENSMUSG00000097669ENSMUST00000181799ENSMUSG00000097900ENSMUST00000181363
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078J_0001ENSDARG00000027899ENSDART00000038038ENSDARG00000070172ENSDART00000102780ENSDART00000141163CIL_00078J_0002ENSMUSG00000015112ENSMUST00000015256ENSMUST00000169197ENSMUST00000177698ENSMUST00000177805ENSMUST00000179756ENSMUST00000188414ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000093380ENSMUST00000176654ENSMUSG00000093482ENSMUST00000175814ENSMUST00000176283ENSMUST00000181192ENSMUST00000181343ENSMUST00000181633ENSMUSG00000093658ENSMUST00000177082ENSMUST00000177332ENSMUSG00000097175ENSMUST00000181136ENSMUSG00000097669ENSMUST00000181799ENSMUSG00000097900ENSMUST00000181363
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000027899 ENSDART00000038038 N/A N/A N/A 37.743±8.75 N/A N/A 25.877±8.08 17.949±2.65 5.659±0.00 N/A 48.297±0.00 N/A N/A N/A
ENSDARG00000070172 ENSDART00000102780 N/A N/A N/A 1.846±0.00 N/A N/A 0.645±0.10 0.066±0.00 N/A N/A 0.246±0.00 N/A N/A N/A
ENSDART00000137119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141163 N/A N/A N/A 1.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015112 ENSMUST00000015256 0.874±0.73 1.821±0.68 1.226±0.02 1.069±0.05 0.888±0.26 2.147±1.17 20.504±2.51 19.532±5.92 31.364±17.33 1.295±0.00 0.179±0.06 3.926±2.62 8.991±5.59 0.949±0.35
ENSMUST00000169197 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A 0.037±0.00 1.659±0.52 2.308±1.37 N/A
ENSMUST00000177698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 7.096±0.00 8.278±5.02 0.852±0.00
ENSMUST00000177805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A
ENSMUST00000179756 N/A N/A N/A 0.951±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188414 1.793±0.00 1.539±0.72 N/A 0.729±0.00 N/A 3.597±1.75 4.700±0.00 2.477±0.00 4.848±2.51 1.153±0.17 N/A 2.348±1.13 4.130±2.00 N/A
ENSMUST00000189611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042541 ENSMUST00000041111 20.140±5.83 16.411±1.52 40.598±1.84 13.634±5.00 14.402±5.17 26.797±3.04 20.897±4.34 24.445±4.75 37.267±18.12 30.813±1.46 25.093±4.54 25.641±4.60 36.321±16.85 25.732±3.90
ENSMUSG00000093380 ENSMUST00000176654 N/A N/A N/A 0.023±0.00 N/A N/A 0.187±0.09 N/A N/A N/A N/A 0.092±0.00 N/A 0.138±0.06
ENSMUSG00000093482 ENSMUST00000175814 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00
ENSMUST00000176283 N/A N/A 0.031±0.01 N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A 0.058±0.00 0.028±0.02 2.537±1.05
ENSMUST00000181192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.340±1.41
ENSMUST00000181343 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 0.011±0.00 0.126±0.03 N/A N/A 0.053±0.00 N/A
ENSMUST00000181633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.107±0.00
ENSMUSG00000093658 ENSMUST00000177082 N/A N/A N/A N/A N/A N/A 0.072±0.02 0.054±0.00 N/A N/A N/A N/A N/A 0.017±0.00
ENSMUST00000177332 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 0.016±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUSG00000097175 ENSMUST00000181136 N/A N/A 0.217±0.00 0.631±0.00 N/A N/A 0.888±0.00 N/A N/A N/A N/A 1.245±0.00 8.835±0.00 N/A
ENSMUSG00000097669 ENSMUST00000181799 N/A N/A N/A N/A N/A N/A 0.747±0.02 N/A N/A N/A N/A N/A N/A 0.629±0.00
ENSMUSG00000097900 ENSMUST00000181363 N/A N/A 0.027±0.00 0.021±0.01 N/A N/A 0.367±0.14 N/A 0.030±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.711±0.66

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