C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188414 Slc25a13-202 ENSMUSG00000015112 10090 - 6:6041219-6217173 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000188414
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000188414 1.793±0.00 1.539±0.72 0.729±0.00 3.597±1.75 4.700±0.00 2.477±0.00 4.848±2.51 1.153±0.17 2.348±1.13 4.130±2.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AS CIL_0008AS_0002 VISTA 6:5697407-6297858
CIL_0008Z2 CIL_0008Z2_0002 VISTA 6:5705995-6306609
CIL_00053F CIL_00053F_0002 CGP 6:5725639-6217173
CIL_0008Z3 CIL_0008Z3_0002 VISTA 6:5726899-6328252
CIL_0007W8 CIL_0007W8_0002 VISTA 6:5861772-6464755
CIL_00097Z CIL_00097Z_0002 VISTA 6:6016533-6617120
CIL_00078J CIL_00078J_0002 CGP 6:6041218-6578658

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IMP L-glutamate transmembrane transporter activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006754 IEA ATP biosynthetic process
GO:0015183 ISS L-aspartate transmembrane transporter activity
GO:0015810 IMP aspartate transport
GO:0015813 ISS L-glutamate transport
GO:0016021 IEA integral component of membrane
GO:0043490 IMP malate-aspartate shuttle
GO:0045333 IEA cellular respiration
GO:0051592 ISS response to calcium ion
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265631 SLC25A13-001 protein_coding Homo_sapiens 0 2719
ENST00000416240 SLC25A13-201 protein_coding Homo_sapiens 0 2771
ENST00000472162 SLC25A13-005 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000484495 SLC25A13-003 processed_transcript Homo_sapiens 0 544
ENST00000490072 SLC25A13-002 processed_transcript Homo_sapiens 0 475
ENST00000492869 SLC25A13-006 processed_transcript Homo_sapiens 0 394
ENST00000494085 SLC25A13-007 processed_transcript Homo_sapiens 0 296
ENST00000538551 RP11-627K11.3-001 processed_pseudogene Homo_sapiens 0 272

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