Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0007DE_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000147872-ENSG00000137145	CGP	9606	9:19108375-19373545
Gene	Transcript	Position	Biotype
ENSG00000137145 (DENND4C) DENN/MADD domain containing 4C	ENST00000361024 (DENND4C-003)	19346556-19373545	protein_coding
	ENST00000380424 (DENND4C-004)	19346728-19357695	protein_coding
	ENST00000380427 (DENND4C-002)	19342669-19372880	protein_coding
	ENST00000380437 (DENND4C-008)	19290758-19372594	retained_intron
	ENST00000434457 (DENND4C-006)	19230435-19372598	protein_coding
	ENST00000494124 (DENND4C-009)	19290758-19372594	nonsense_mediated_decay
	ENST00000602442 (DENND4C-010)	19336404-19341044	retained_intron
	ENST00000602708 (DENND4C-007)	19230797-19276671	retained_intron
	ENST00000602925 (DENND4C-005)	19230435-19372858	protein_coding
ENSG00000147872 (PLIN2) perilipin 2	ENST00000276914 (PLIN2-007)	19115770-19127576	protein_coding
	ENST00000380464 (PLIN2-003)	19123313-19127490	protein_coding
	ENST00000380465 (PLIN2-002)	19123235-19127476	protein_coding
	ENST00000434144 (PLIN2-005)	19121100-19149278	protein_coding
	ENST00000464326 (PLIN2-004)	19108375-19118446	processed_transcript
	ENST00000472715 (PLIN2-001)	19125633-19127490	processed_transcript
	ENST00000475923 (PLIN2-008)	19125506-19127475	processed_transcript
	ENST00000494753 (PLIN2-006)	19129737-19149290	processed_transcript
ENSG00000232176 (RP11-146N23.1)	ENST00000397390 (RP11-146N23.1-001)	19200335-19201046	processed_pseudogene
ENSG00000232978 (RP11-146N23.4)	ENST00000417577 (RP11-146N23.4-001)	19291337-19292576	antisense

CIL_0007DE_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000028494-ENSMUSG00000038024	CGP	10090	4:86648386-86850603
Gene	Transcript	Position	Biotype
ENSMUSG00000028494 (Plin2) perilipin 2	ENSMUST00000000466 (Plin2-001)	86656565-86670060	protein_coding
	ENSMUST00000134094 (Plin2-004)	86667665-86669986	processed_transcript
	ENSMUST00000134437 (Plin2-006)	86657156-86659148	processed_transcript
	ENSMUST00000138605 (Plin2-005)	86656907-86658644	processed_transcript
	ENSMUST00000140382 (Plin2-002)	86661934-86669768	protein_coding
	ENSMUST00000147097 (Plin2-008)	86660121-86665725	protein_coding
	ENSMUST00000149700 (Plin2-003)	86661934-86669560	protein_coding
	ENSMUST00000154999 (Plin2-007)	86648386-86658683	processed_transcript
ENSMUSG00000038024 (Dennd4c) DENN/MADD domain containing 4C	ENSMUST00000045512 (Dennd4c-201)	86748555-86830167	protein_coding
	ENSMUST00000082026 (Dennd4c-001)	86748555-86850603	protein_coding
	ENSMUST00000128710 (Dennd4c-002)	86777843-86781752	processed_transcript
	ENSMUST00000142837 (Dennd4c-003)	86774255-86849055	protein_coding
ENSMUSG00000082969 (Gm12630) predicted gene 12630	ENSMUST00000121575 (Gm12630-001)	86817794-86818577	processed_pseudogene

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000137145

ENST00000361024

N/A

3.174±0.00

N/A

1.415±0.00

2.462±0.00

1.809±0.00

1.289±0.00

N/A

2.817±0.00

0.886±0.00

5.663±0.66

2.391±1.52

3.393±0.81

ENST00000380424

N/A

ENST00000380427

2.431±0.00

N/A

2.531±0.00

N/A

1.789±0.00

1.105±0.00

N/A

2.095±0.00

1.552±0.00

N/A

ENST00000380437

N/A

1.115±0.00

ENST00000434457

N/A

1.761±0.00

2.028±0.00

N/A

7.285±0.00

7.302±0.00

0.422±0.00

0.822±0.00

3.016±0.00

N/A

2.736±2.16

3.135±0.00

1.236±0.00

ENST00000494124

N/A

1.619±0.00

N/A

2.835±0.00

N/A

ENST00000602442

N/A

ENST00000602708

N/A

ENST00000602925

N/A

0.887±0.00

N/A

4.099±0.00

N/A

1.183±0.00

1.463±0.51

2.209±0.00

1.501±0.43

ENSG00000147872

ENST00000276914

291.321±0.00

41.459±0.00

9.021±0.00

3.662±1.86

44.144±19.66

127.368±122.67

17.889±15.75

69.994±42.59

47.191±36.21

26.268±14.97

30.174±22.09

42.908±25.01

62.912±29.24

23.176±7.77

N/A

N/A

N/A

N/A

1.705±0.00

N/A

ENST00000472715

N/A

ENST00000475923

N/A

ENST00000494753

N/A

ENSG00000232176

ENST00000397390

0.112±0.00

0.256±0.00

0.204±0.00

0.388±0.09

0.166±0.11

0.348±0.00

0.484±0.00

0.257±0.00

0.070±0.00

0.149±0.00

0.260±0.00

0.668±0.88

0.060±0.00

0.399±0.06

ENSG00000232978

ENST00000417577

0.218±0.00

N/A

0.102±0.00

0.820±0.58

0.604±0.54

0.048±0.00

0.116±0.00

0.890±0.00

4.526±0.00

N/A

2.046±2.33

0.569±0.00

0.378±0.17

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000028494

ENSMUST00000000466

244.658±118.86

68.170±8.60

57.137±8.55

9.261±6.64

109.201±19.95

41.356±6.06

26.736±1.54

52.968±6.20

137.787±39.10

61.350±16.42

5.406±0.89

32.028±9.13

65.154±36.43

5.905±2.52

ENSMUST00000134094

N/A

ENSMUST00000134437

N/A

53.031±6.58

N/A

33.785±10.05

N/A

ENSMUST00000138605

N/A

ENSMUST00000140382

N/A

31.698±4.02

N/A

ENSMUST00000147097

N/A

3.486±0.00

N/A

72.518±0.00

91.622±33.56

23.166±0.00

ENSMUST00000149700

N/A

55.616±25.94

N/A

ENSMUST00000154999

N/A

120.294±11.30

N/A

116.160±20.59

63.136±12.00

19.622±1.96

N/A

130.295±10.88

45.993±0.00

6.481±0.30

53.796±11.55

N/A

13.175±0.79

ENSMUSG00000038024

ENSMUST00000045512

N/A

1.572±0.26

N/A

1.740±0.65

N/A

ENSMUST00000082026

7.213±3.59

3.991±0.69

6.925±0.07

2.272±0.83

5.021±0.52

8.432±0.29

2.562±0.75

3.217±0.31

2.494±0.52

6.206±0.76

1.800±0.57

6.106±2.29

5.161±3.33

2.999±0.46

ENSMUST00000128710

N/A

ENSMUST00000142837

1.004±0.10

N/A

1.289±0.00

0.986±0.00

N/A

0.764±0.11

0.549±0.01

0.600±0.13

N/A

5.683±0.00

1.608±0.73

2.897±0.00

ENSMUSG00000082969

ENSMUST00000121575

0.598±0.20

0.271±0.07

0.192±0.11

0.445±0.14

0.421±0.18

0.406±0.10

0.249±0.04

0.443±0.20

0.137±0.09

0.363±0.25

N/A

0.539±0.16

0.158±0.06

0.237±0.04

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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