C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397390 RP11-146N23.1-001 ENSG00000232176 9606 - 9:19200335-19201046 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397390 0.112±0.00 0.256±0.00 0.204±0.00 0.388±0.09 0.166±0.11 0.348±0.00 0.484±0.00 0.257±0.00 0.070±0.00 0.149±0.00 0.260±0.00 0.668±0.88 0.060±0.00 0.399±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DE CIL_0007DE_0001 CGP 9:19108375-19373545

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100510 Gm16409-201 processed_pseudogene Mus_musculus 0 427
ENSMUST00000121853 Gm11263-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000079841 Rps6-ps2-201 processed_pseudogene Mus_musculus 0 383
ENSMUST00000118220 Gm8145-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121487 Gm11604-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000120745 Gm9143-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000122061 Gm14138-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000102814 Rps6-001 protein_coding Mus_musculus 0 416
ENSMUST00000136174 Rps6-002 processed_transcript Mus_musculus 0 409
ENSMUST00000123229 Rps6-004 processed_transcript Mus_musculus 0 416
ENSMUST00000130001 Rps6-003 processed_transcript Mus_musculus 1e-20 104
ENSMUST00000074205 Rps6-ps1-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000118010 Rps6-ps3-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000118499 Rps6-ps4-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000120762 Gm8172-001 processed_pseudogene Mus_musculus 0 416

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