C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007HC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183153-ENSG00000131747 CGP 9606 17:40362931-40417950
GeneTranscriptPositionBiotype
ENSG00000131747 (TOP2A)
topoisomerase (DNA) II alpha 170kDa 		ENST00000423485 (TOP2A-001) 40388516-40417950 protein_coding
ENST00000577541 (TOP2A-006) 40388526-40389602 protein_coding
ENST00000577706 (TOP2A-004) 40396383-40399261 retained_intron
ENST00000578412 (TOP2A-005) 40389562-40392101 retained_intron
ENST00000581055 (TOP2A-003) 40413480-40417705 protein_coding
ENSG00000183153 (GJD3)
gap junction protein, delta 3, 31.9kDa 		ENST00000578689 (GJD3-001) 40362931-40363815 protein_coding
ENSG00000222881 (Y_RNA)
Y RNA 		ENST00000410949 (Y_RNA.1-820) 40391232-40391338 misc_RNA
ENSG00000264655 (CTD-2267D19.4)
 ENST00000583752 (CTD-2267D19.4-001) 40367952-40368438 processed_pseudogene
ENSG00000266208 (CTD-2267D19.3)
 ENST00000578774 (CTD-2267D19.3-001) 40360655-40364693 antisense
ENSG00000278346 (CTD-2267D19.7)
 ENST00000612552 (CTD-2267D19.7-001) 40380666-40381838 processed_pseudogene
CIL_0007HC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047197-ENSMUSG00000020914 CGP 10090 11:98982180-99024189
GeneTranscriptPositionBiotype
ENSMUSG00000020914 (Top2a)
topoisomerase (DNA) II alpha 		ENSMUST00000068031 (Top2a-001) 98992943-99024189 protein_coding
ENSMUST00000129777 (Top2a-003) 99022085-99024178 processed_transcript
ENSMUST00000139460 (Top2a-007) 98993467-98995370 processed_transcript
ENSMUST00000139730 (Top2a-002) 99016593-99022210 processed_transcript
ENSMUST00000144318 (Top2a-004) 99003625-99006522 processed_transcript
ENSMUST00000151997 (Top2a-005) 98999947-99001260 processed_transcript
ENSMUST00000154332 (Top2a-008) 98993071-98995724 processed_transcript
ENSMUSG00000047197 (Gjd3)
gap junction protein, delta 3 		ENSMUST00000062931 (Gjd3-001) 98982180-98983016 protein_coding
ENSMUSG00000077285 (Gm26394)
predicted gene, 26394 		ENSMUST00000104097 (Gm26394-201) 98999508-98999622 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HC_0001ENSG00000131747ENST00000423485ENST00000577541ENST00000577706ENST00000578412ENST00000581055ENSG00000183153ENST00000578689ENSG00000222881ENST00000410949ENSG00000264655ENST00000583752ENSG00000266208ENST00000578774ENSG00000278346ENST00000612552CIL_0007HC_0002ENSMUSG00000020914ENSMUST00000068031ENSMUST00000129777ENSMUST00000139460ENSMUST00000139730ENSMUST00000144318ENSMUST00000151997ENSMUST00000154332ENSMUSG00000047197ENSMUST00000062931ENSMUSG00000077285ENSMUST00000104097
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HC_0001ENSG00000131747ENST00000423485ENST00000577541ENST00000578412ENST00000581055ENSG00000183153ENST00000578689ENSG00000222881ENST00000410949ENSG00000264655ENST00000583752ENSG00000266208ENST00000578774ENSG00000278346ENST00000612552CIL_0007HC_0002ENSMUSG00000020914ENSMUST00000068031ENSMUST00000139460ENSMUST00000144318ENSMUST00000154332ENSMUSG00000047197ENSMUST00000062931ENSMUSG00000077285ENSMUST00000104097
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131747 ENST00000423485 N/A 0.315±0.00 0.030±0.00 0.022±0.01 2.890±0.00 2.967±2.79 0.227±0.00 0.088±0.00 N/A 1.105±0.00 N/A 13.719±12.54 10.563±10.58 18.287±6.74
ENST00000577541 N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 0.351±0.00 N/A N/A N/A N/A N/A
ENST00000577706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578412 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581055 N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183153 ENST00000578689 N/A N/A 1.066±0.00 0.487±0.00 N/A N/A N/A 4.802±0.00 N/A N/A 1.696±1.39 9.215±0.00 6.488±2.59 2.582±0.00
ENSG00000222881 ENST00000410949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.854±0.00 N/A 2.475±0.00
ENSG00000264655 ENST00000583752 0.101±0.00 0.245±0.00 N/A 0.266±0.00 0.036±0.00 0.261±0.00 0.064±0.00 N/A 0.032±0.00 0.068±0.00 0.031±0.00 0.111±0.00 N/A 0.194±0.00
ENSG00000266208 ENST00000578774 2.661±0.00 6.412±0.00 0.205±0.00 0.128±0.00 3.385±0.00 0.868±0.49 0.609±0.57 1.413±1.22 0.976±0.94 0.908±0.00 0.235±0.00 1.064±0.48 2.665±0.53 1.722±0.46
ENSG00000278346 ENST00000612552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020914 ENSMUST00000068031 0.960±1.24 0.200±0.07 1.218±0.04 11.221±1.52 0.538±0.19 2.387±0.63 0.078±0.02 0.177±0.06 19.687±24.26 0.481±0.18 0.032±0.02 4.207±4.34 18.394±13.92 12.166±6.73
ENSMUST00000129777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139460 N/A N/A N/A N/A N/A N/A 0.138±0.03 N/A 0.117±0.02 N/A 0.159±0.00 1.992±0.00 N/A N/A
ENSMUST00000139730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144318 N/A N/A N/A N/A 0.884±0.12 1.883±0.07 N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A
ENSMUST00000151997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154332 N/A 0.517±0.11 N/A N/A N/A 3.245±0.00 N/A 0.515±0.19 0.298±0.11 N/A 0.091±0.00 2.375±0.88 N/A N/A
ENSMUSG00000047197 ENSMUST00000062931 0.277±0.21 0.208±0.07 0.311±0.08 0.817±0.12 0.316±0.15 1.032±0.40 0.591±0.20 0.164±0.11 0.046±0.02 0.148±0.08 N/A 1.854±0.98 0.069±0.03 0.189±0.00
ENSMUSG00000077285 ENSMUST00000104097 N/A N/A N/A 12.446±0.00 N/A N/A N/A N/A 10.042±0.00 N/A N/A 37.927±0.00 N/A N/A

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