C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007IF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020976-ENSDARG00000004796 CGP 7955 3:55687074-55723819
GeneTranscriptPositionBiotype
ENSDARG00000004796 (mgrn1b)
mahogunin, ring finger 1b 		ENSDART00000008988 (mgrn1b-201) 55704179-55723819 protein_coding
ENSDART00000078221 (mgrn1b-202) 55701269-55723819 protein_coding
ENSDARG00000020976 (ubald1b)
UBA-like domain containing 1b 		ENSDART00000005518 (ubald1b-201) 55687074-55697958 protein_coding
ENSDART00000074010 (ubald1b-202) 55689264-55697958 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007IF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153443-ENSG00000102858 CGP 9606 16:4608883-4690974
GeneTranscriptPositionBiotype
ENSG00000102858 (MGRN1)
mahogunin ring finger 1, E3 ubiquitin protein ligase 		ENST00000262370 (MGRN1-001) 4624790-4690974 protein_coding
ENST00000399577 (MGRN1-004) 4624868-4690972 protein_coding
ENST00000415496 (MGRN1-201) 4624824-4690974 protein_coding
ENST00000536343 (MGRN1-002) 4624842-4688809 nonsense_mediated_decay
ENST00000585676 (MGRN1-013) 4681348-4683872 retained_intron
ENST00000586183 (MGRN1-006) 4624961-4689039 protein_coding
ENST00000587145 (MGRN1-008) 4664069-4673622 processed_transcript
ENST00000587747 (MGRN1-003) 4624846-4688843 protein_coding
ENST00000588015 (MGRN1-014) 4668297-4677326 processed_transcript
ENST00000588111 (MGRN1-012) 4680428-4682907 processed_transcript
ENST00000588994 (MGRN1-005) 4624961-4688908 protein_coding
ENST00000590457 (MGRN1-009) 4664416-4673522 retained_intron
ENST00000590790 (MGRN1-017) 4650387-4680067 protein_coding
ENST00000591673 (MGRN1-010) 4669121-4681580 processed_transcript
ENST00000591895 (MGRN1-007) 4616493-4657363 protein_coding
ENST00000592256 (MGRN1-011) 4680173-4683932 processed_transcript
ENST00000593224 (MGRN1-019) 4650400-4673554 protein_coding
ENST00000615397 (MGRN1-020) 4649080-4651106 retained_intron
ENSG00000153443 (UBALD1)
UBA-like domain containing 1 		ENST00000283474 (UBALD1-001) 4608883-4614926 protein_coding
ENST00000587615 (UBALD1-013) 4609368-4614872 protein_coding
ENST00000587649 (UBALD1-010) 4609721-4614873 protein_coding
ENST00000588691 (UBALD1-012) 4608884-4614876 non_stop_decay
ENST00000590891 (UBALD1-005) 4608883-4611523 protein_coding
ENST00000590965 (UBALD1-003) 4608883-4614874 protein_coding
ENST00000591113 (UBALD1-011) 4609831-4614402 protein_coding
ENST00000591401 (UBALD1-002) 4608883-4614881 protein_coding
ENST00000591897 (UBALD1-004) 4608883-4615027 protein_coding
ENSG00000261442 (RP11-709D24.6)
 ENST00000569678 (RP11-709D24.6-001) 4634329-4640623 antisense
ENSG00000263955 (RN7SL850P)
RNA, 7SL, cytoplasmic 850, pseudogene 		ENST00000579959 (RN7SL850P-201) 4633591-4633881 misc_RNA
ENSG00000276641 (MIR6769A)
microRNA 6769a 		ENST00000617340 (MIR6769A-201) 4671318-4671390 miRNA
ENSG00000278700 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613380 (Metazoa_SRP.1-485) 4658851-4659151 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007IF_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039568-ENSMUSG00000022517 CGP 10090 16:4874778-4938296
GeneTranscriptPositionBiotype
ENSMUSG00000022517 (Mgrn1)
mahogunin, ring finger 1 		ENSMUST00000023159 (Mgrn1-201) 4886100-4938296 protein_coding
ENSMUST00000070658 (Mgrn1-202) 4886100-4938296 protein_coding
ENSMUSG00000039568 (Ubald1)
UBA-like domain containing 1 		ENSMUST00000037843 (Ubald1-001) 4874778-4880315 protein_coding
ENSMUST00000143873 (Ubald1-002) 4874788-4879805 retained_intron
ENSMUSG00000097397 (Gm16861)
predicted gene, 16861 		ENSMUST00000181498 (Gm16861-201) 4935048-4939585 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IF_0001ENSDARG00000004796ENSDART00000008988ENSDART00000078221ENSDARG00000020976ENSDART00000005518ENSDART00000074010CIL_0007IF_0002ENSG00000102858ENST00000262370ENST00000399577ENST00000415496ENST00000536343ENST00000585676ENST00000586183ENST00000587145ENST00000587747ENST00000588015ENST00000588111ENST00000588994ENST00000590457ENST00000590790ENST00000591673ENST00000591895ENST00000592256ENST00000593224ENST00000615397ENSG00000153443ENST00000283474ENST00000587615ENST00000587649ENST00000588691ENST00000590891ENST00000590965ENST00000591113ENST00000591401ENST00000591897ENSG00000261442ENST00000569678ENSG00000263955ENST00000579959ENSG00000276641ENST00000617340ENSG00000278700ENST00000613380CIL_0007IF_0003ENSMUSG00000022517ENSMUST00000023159ENSMUST00000070658ENSMUSG00000039568ENSMUST00000037843ENSMUST00000143873ENSMUSG00000097397ENSMUST00000181498
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IF_0001ENSDARG00000004796ENSDART00000008988ENSDART00000078221ENSDARG00000020976ENSDART00000005518ENSDART00000074010CIL_0007IF_0002ENSG00000102858ENST00000262370ENST00000399577ENST00000415496ENST00000586183ENST00000588994ENST00000590457ENST00000590790ENST00000591673ENST00000591895ENSG00000153443ENST00000283474ENST00000587615ENST00000587649ENST00000588691ENST00000590891ENST00000590965ENST00000591401ENST00000591897ENSG00000261442ENST00000569678ENSG00000263955ENST00000579959ENSG00000276641ENST00000617340ENSG00000278700ENST00000613380CIL_0007IF_0003ENSMUSG00000022517ENSMUST00000023159ENSMUST00000070658ENSMUSG00000039568ENSMUST00000037843ENSMUST00000143873ENSMUSG00000097397ENSMUST00000181498
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004796 ENSDART00000008988 N/A N/A N/A 9.105±2.49 N/A N/A 4.326±3.20 8.841±4.36 N/A N/A N/A N/A N/A N/A
ENSDART00000078221 N/A N/A N/A N/A N/A N/A 1.200±0.58 N/A N/A N/A 0.277±0.00 N/A N/A N/A
ENSDARG00000020976 ENSDART00000005518 N/A N/A N/A 2.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000074010 N/A N/A N/A 0.701±0.00 N/A N/A 5.966±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102858 ENST00000262370 25.184±0.00 19.643±0.00 N/A 5.507±3.50 18.632±0.00 4.563±0.00 7.065±0.00 6.330±3.97 5.351±3.27 6.911±5.82 12.487±12.16 26.288±12.65 17.194±6.41 12.141±2.07
ENST00000399577 N/A N/A N/A 0.409±0.00 0.878±0.00 0.985±0.00 0.195±0.00 N/A N/A N/A 0.360±0.00 3.017±2.45 N/A N/A
ENST00000415496 N/A N/A N/A 2.814±0.00 N/A N/A N/A N/A N/A 0.428±0.00 N/A 2.541±0.00 N/A 2.070±0.00
ENST00000536343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586183 N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000587145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588994 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.097±0.00 0.901±0.00 N/A N/A N/A
ENST00000590457 N/A N/A N/A 7.525±0.00 4.747±0.00 6.530±0.00 N/A 12.097±0.00 N/A 7.164±0.00 N/A N/A N/A N/A
ENST00000590790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.854±0.00 10.157±7.85 N/A N/A
ENST00000591673 N/A N/A 5.416±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591895 N/A N/A N/A N/A N/A 6.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153443 ENST00000283474 8.805±0.00 3.601±0.00 0.533±0.00 7.544±6.38 4.786±0.00 6.397±0.00 9.046±0.00 7.575±0.00 1.844±1.65 4.786±0.00 4.697±0.00 12.423±1.64 26.290±3.40 3.418±0.00
ENST00000587615 N/A 6.400±0.00 N/A 11.590±0.00 5.230±4.84 3.644±3.20 N/A 9.168±0.00 3.733±0.00 N/A 8.450±0.00 12.522±4.66 14.186±0.00 8.848±2.06
ENST00000587649 N/A N/A N/A N/A N/A 5.114±4.59 0.169±0.00 2.141±0.00 N/A 0.225±0.00 N/A N/A N/A N/A
ENST00000588691 N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A N/A 0.342±0.00 2.839±0.00 N/A N/A N/A
ENST00000590891 N/A 1.256±0.00 N/A 0.182±0.00 N/A 2.624±0.00 0.965±0.00 1.735±0.00 N/A 1.658±0.00 N/A 0.820±0.63 N/A N/A
ENST00000590965 N/A N/A N/A N/A N/A 2.767±0.00 N/A N/A N/A N/A N/A N/A N/A 3.029±0.00
ENST00000591113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591401 5.781±0.00 N/A 1.090±0.00 N/A 7.914±0.00 N/A N/A N/A 7.441±0.00 12.516±0.00 8.037±0.00 N/A N/A 10.058±0.00
ENST00000591897 N/A N/A N/A N/A 0.479±0.00 N/A 0.158±0.00 0.659±0.00 N/A N/A 0.104±0.00 30.600±0.00 13.955±8.09 21.020±0.00
ENSG00000261442 ENST00000569678 N/A 0.160±0.00 N/A 0.062±0.02 0.150±0.10 0.028±0.00 0.046±0.00 0.035±0.00 0.045±0.00 0.100±0.03 0.099±0.00 0.253±0.33 0.032±0.00 0.733±0.27
ENSG00000263955 ENST00000579959 0.671±0.00 1.691±0.00 N/A 0.260±0.00 0.057±0.00 0.420±0.00 0.184±0.00 0.541±0.00 0.589±0.00 0.561±0.00 0.279±0.00 1.214±0.57 0.319±0.00 0.485±0.02
ENSG00000276641 ENST00000617340 N/A 1.045±0.00 N/A 0.568±0.00 1.624±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278700 ENST00000613380 N/A 0.606±0.00 N/A 0.075±0.00 0.558±0.27 N/A 0.700±0.00 0.780±0.00 N/A N/A N/A 0.183±0.04 0.117±0.00 0.123±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022517 ENSMUST00000023159 7.965±0.77 11.087±2.34 4.294±0.10 6.442±0.47 8.457±0.94 10.124±2.53 10.002±1.87 11.906±1.45 2.949±1.37 6.966±1.23 2.501±0.53 10.567±4.38 3.468±0.53 1.796±0.34
ENSMUST00000070658 42.674±0.63 49.440±3.35 34.029±6.25 41.441±2.66 40.060±11.33 50.105±3.78 71.325±9.93 57.379±5.12 16.296±4.74 42.373±2.36 13.268±1.51 50.559±18.72 18.899±5.63 8.757±3.10
ENSMUSG00000039568 ENSMUST00000037843 16.630±1.01 18.233±0.61 11.783±2.90 12.131±5.12 17.318±7.80 16.952±1.25 5.651±1.70 11.089±2.12 4.919±0.47 19.241±2.51 17.074±1.41 13.410±3.95 13.456±7.83 21.054±9.76
ENSMUST00000143873 2.695±0.62 1.838±0.12 2.624±0.30 1.480±0.19 3.044±0.24 2.237±0.33 1.318±0.14 1.366±0.24 0.732±0.22 3.730±0.23 1.010±0.19 2.693±0.66 1.110±0.31 3.249±0.29
ENSMUSG00000097397 ENSMUST00000181498 4.444±0.16 5.988±0.51 N/A 4.831±0.00 8.481±0.94 9.563±0.24 2.600±0.39 6.736±0.55 3.744±0.64 8.100±1.08 N/A 27.439±4.18 N/A 3.011±0.14

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