C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055993 Ric3-001 ENSMUSG00000048330 10090 - 7:109034312-109083331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055993
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055993 0.784±0.44 6.988±0.00 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460
CIL_0007IX CIL_0007IX_0003 CGP 7:109010825-109083331
CIL_00043B CIL_00043B_0002 CGP 7:109034312-109170308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0006457 IDA protein folding
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007271 IEA synaptic transmission, cholinergic
GO:0016021 IDA integral component of membrane
GO:0033130 IEA acetylcholine receptor binding
GO:0043623 IDA cellular protein complex assembly
GO:0044183 IDA protein binding involved in protein folding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309737 RIC3-008 protein_coding Homo_sapiens 0 1373
ENST00000335425 RIC3-001 protein_coding Homo_sapiens 0 553
ENST00000343202 RIC3-002 protein_coding Homo_sapiens 0 1360
ENST00000419822 RIC3-004 protein_coding Homo_sapiens 0 444
ENST00000425599 RIC3-009 protein_coding Homo_sapiens 0 503
ENST00000524799 RIC3-014 processed_transcript Homo_sapiens 0 845
ENST00000526962 RIC3-003 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000528463 RIC3-005 nonsense_mediated_decay Homo_sapiens 0 1162
ENST00000529035 RIC3-013 processed_transcript Homo_sapiens 0 481
ENST00000530060 RIC3-010 processed_transcript Homo_sapiens 0 739
ENST00000531450 RIC3-006 protein_coding Homo_sapiens 0 638

Loading