C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby candidate gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033341 Tub-001 ENSMUSG00000031028 10090 + 7:109010825-109034460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033341
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033341 0.518±0.23 14.313±5.67 27.410±5.20 0.554±0.24 0.699±0.03 0.116±0.02 0.180±0.09 0.026±0.01 0.243±0.02 0.082±0.00 0.962±0.42 0.100±0.04 2.502±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460
CIL_0007IX CIL_0007IX_0003 CGP 7:109010825-109083331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005829 IMP cytosol
GO:0005886 IEA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IMP phototransduction
GO:0007605 IMP sensory perception of sound
GO:0008020 IMP G-protein coupled photoreceptor activity
GO:0009584 IMP detection of visible light
GO:0009725 IEA response to hormone
GO:0032403 IEA protein complex binding
GO:0044259 IMP multicellular organismal macromolecule metabolic process
GO:0050766 ISS positive regulation of phagocytosis
GO:0060041 IMP retina development in camera-type eye
GO:0097500 IMP receptor localization to nonmotile primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089574 TUB-201 protein_coding Danio_rerio 1e-34 154
ENST00000299506 TUB-003 protein_coding Homo_sapiens 0 2324
ENST00000305253 TUB-002 protein_coding Homo_sapiens 0 2091
ENST00000335425 RIC3-001 protein_coding Homo_sapiens 0 224
ENST00000534099 TUB-001 protein_coding Homo_sapiens 0 2097

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