Notice (8): Undefined index: CIL_0007KL_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000140836' => 'zinc finger homeobox 3',
'ENSG00000197445' => 'chromosome 16 open reading frame 47',
'ENSG00000207514' => 'RNA, U6 small nuclear 385, pseudogene',
'ENSG00000221286' => null,
'ENSG00000221799' => null,
'ENSG00000225178' => 'ribosomal protein SA pseudogene 56',
'ENSG00000238731' => 'RNA, U7 small nuclear 90 pseudogene',
'ENSG00000251868' => 'RNA, U7 small nuclear 71 pseudogene',
'ENSG00000258582' => null,
'ENSG00000258779' => null,
'ENSG00000259209' => null,
'ENSG00000259768' => null,
'ENSG00000259817' => null,
'ENSG00000259971' => null,
'ENSG00000260664' => null,
'ENSG00000260687' => null,
'ENSG00000260848' => null,
'ENSG00000260880' => 'hepatocellular carcinoma associated transcript 5 (non-protein coding)',
'ENSG00000261008' => null,
'ENSG00000261227' => null,
'ENSG00000261764' => 'keratin 18 pseudogene 18',
'ENSG00000265573' => null,
'ENSG00000271009' => null,
'ENSG00000272250' => null,
'ENSG00000272330' => null,
'ENSG00000273581' => null,
'ENSG00000277431' => null,
'ENSG00000279120' => null,
'ENSG00000279206' => null,
'ENSG00000279591' => null,
'ENSG00000279757' => null,
'ENSG00000280092' => null,
'ENSG00000280264' => null,
'ENSMUSG00000038872' => 'zinc finger homeobox 3',
'ENSMUSG00000093241' => 'microRNA 3108',
'ENSMUSG00000093697' => 'predicted gene 20686',
'ENSMUSG00000097393' => 'RIKEN cDNA D030068K23 gene',
'ENSDARG00000073681' => 'zinc finger homeobox 3',
'ENSDARG00000084473' => '5S ribosomal RNA',
'ENSDARG00000086542' => '5S ribosomal RNA',
'ENSDARG00000088674' => '5S ribosomal RNA',
'ENSDARG00000089126' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000140836' => 'ZFHX3',
'ENSG00000197445' => 'C16orf47',
'ENSG00000207514' => 'RNU6-385P',
'ENSG00000221286' => 'AC092289.1',
'ENSG00000221799' => 'AC132068.1',
'ENSG00000225178' => 'RPSAP56',
'ENSG00000238731' => 'RNU7-90P',
'ENSG00000251868' => 'RNU7-71P',
'ENSG00000258582' => 'RP11-44L9.1',
'ENSG00000258779' => 'RP11-140I24.1',
'ENSG00000259209' => 'RP5-991G20.2',
'ENSG00000259768' => 'RP5-991G20.1',
'ENSG00000259817' => 'RP11-53L24.1',
'ENSG00000259971' => 'RP11-44L9.3',
'ENSG00000260664' => 'AC004158.3',
'ENSG00000260687' => 'RP11-44L9.2',
'ENSG00000260848' => 'CTD-2009A10.1',
'ENSG00000260880' => 'HCCAT5',
'ENSG00000261008' => 'AC004158.2',
'ENSG00000261227' => 'AC140912.1',
'ENSG00000261764' => 'KRT18P18',
'ENSG00000265573' => 'AC004943.1',
'ENSG00000271009' => 'RP11-346C20.3',
'ENSG00000272250' => 'RP11-346C20.4',
'ENSG00000272330' => 'AC002044.4',
'ENSG00000273581' => 'AC092289.2',
'ENSG00000277431' => 'AC009033.1',
'ENSG00000279120' => 'RP11-140I24.2',
'ENSG00000279206' => 'RP5-991G20.6',
'ENSG00000279591' => 'AC002044.1',
'ENSG00000279757' => 'CTD-2326C4.1',
'ENSG00000280092' => 'AC002044.3',
'ENSG00000280264' => 'AC004158.1',
'ENSMUSG00000038872' => 'Zfhx3',
'ENSMUSG00000093241' => 'Mir3108',
'ENSMUSG00000093697' => 'Gm20686',
'ENSMUSG00000097393' => 'D030068K23Rik',
'ENSDARG00000073681' => 'zfhx3',
'ENSDARG00000084473' => '5S_rRNA',
'ENSDARG00000086542' => '5S_rRNA',
'ENSDARG00000088674' => '5S_rRNA',
'ENSDARG00000089126' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 51 => 'Brain',
(int) 75 => 'Breast',
(int) 100 => 'Colon',
(int) 123 => 'Heart',
(int) 143 => 'Kidney',
(int) 166 => 'Liver',
(int) 190 => 'Lung',
(int) 213 => 'Muscle',
(int) 229 => 'Ovary',
(int) 254 => 'Placenta',
(int) 279 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 60,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000268489' => array(
'start' => '72782885',
'end' => '73048375',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-001'
),
'ENST00000397992' => array(
'start' => '72782885',
'end' => '73059698',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-002'
),
'ENST00000558842' => array(
'start' => '73058881',
'end' => '73059222',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX3-004'
),
'ENST00000563625' => array(
'start' => '72829509',
'end' => '72889834',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX3-003'
),
'ENST00000358463' => array(
'start' => '73126637',
'end' => '73144447',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C16orf47-001'
),
'ENST00000384783' => array(
'start' => '72376704',
'end' => '72376760',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-385P-201'
),
'ENST00000408359' => array(
'start' => '72579542',
'end' => '72579637',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.1-201'
),
'ENST00000408872' => array(
'start' => '72984857',
'end' => '72984954',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC132068.1-201'
),
'ENST00000484897' => array(
'start' => '73940639',
'end' => '73941524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPSAP56-001'
),
'ENST00000459216' => array(
'start' => '72673503',
'end' => '72673564',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-90P-201'
),
'ENST00000516059' => array(
'start' => '72821933',
'end' => '72821992',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-71P-201'
),
'ENST00000557393' => array(
'start' => '73483317',
'end' => '73487744',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.1-001'
),
'ENST00000554640' => array(
'start' => '73387053',
'end' => '73402480',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-002'
),
'ENST00000555721' => array(
'start' => '73386805',
'end' => '73421393',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-001'
),
'ENST00000561875' => array(
'start' => '73387063',
'end' => '73389241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-004'
),
'ENST00000562661' => array(
'start' => '73387053',
'end' => '73421210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-003'
),
'ENST00000558618' => array(
'start' => '72806983',
'end' => '72809639',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-001'
),
'ENST00000620814' => array(
'start' => '72805998',
'end' => '72809872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-003'
),
'ENST00000624370' => array(
'start' => '72807045',
'end' => '72808118',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-004'
),
'ENST00000563328' => array(
'start' => '72665170',
'end' => '72791624',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.1-001'
),
'ENST00000565061' => array(
'start' => '73812621',
'end' => '73816054',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-53L24.1-001'
),
'ENST00000564291' => array(
'start' => '73511176',
'end' => '73511654',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.3-001'
),
'ENST00000564508' => array(
'start' => '72425948',
'end' => '72430266',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-001'
),
'ENST00000624327' => array(
'start' => '72429353',
'end' => '72533892',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-002'
),
'ENST00000562748' => array(
'start' => '73499309',
'end' => '73499763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.2-001'
),
'ENST00000567227' => array(
'start' => '73543941',
'end' => '73558522',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2009A10.1-001'
),
'ENST00000569990' => array(
'start' => '73092349',
'end' => '73093774',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HCCAT5-001'
),
'ENST00000561611' => array(
'start' => '72425485',
'end' => '72665004',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-002'
),
'ENST00000563770' => array(
'start' => '72479751',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-005'
),
'ENST00000563823' => array(
'start' => '72523332',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-006'
),
'ENST00000570035' => array(
'start' => '72522138',
'end' => '72665009',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-001'
),
'ENST00000570152' => array(
'start' => '72570481',
'end' => '72664949',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-004'
),
'ENST00000624829' => array(
'start' => '72283301',
'end' => '72664947',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-007'
),
'ENST00000561802' => array(
'start' => '73232762',
'end' => '73233970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-001'
),
'ENST00000577171' => array(
'start' => '73232055',
'end' => '73233108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-002'
),
'ENST00000565278' => array(
'start' => '72728616',
'end' => '72729894',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KRT18P18-001'
),
'ENST00000584072' => array(
'start' => '72787693',
'end' => '72787773',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004943.1-201'
),
'ENST00000604855' => array(
'start' => '73060470',
'end' => '73062316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.3-001'
),
'ENST00000606272' => array(
'start' => '73060245',
'end' => '73060759',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.4-001'
),
'ENST00000606707' => array(
'start' => '73014319',
'end' => '73014476',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'AC002044.4-001'
),
'ENST00000614764' => array(
'start' => '72607780',
'end' => '72607888',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.2-201'
),
'ENST00000618854' => array(
'start' => '73437113',
'end' => '73437209',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009033.1-201'
),
'ENST00000624279' => array(
'start' => '73293866',
'end' => '73294296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-140I24.2-001'
),
'ENST00000624116' => array(
'start' => '72772673',
'end' => '72773272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-991G20.6-001'
),
'ENST00000624910' => array(
'start' => '73015047',
'end' => '73016016',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.1-001'
),
'ENST00000623805' => array(
'start' => '72973374',
'end' => '72973832',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2326C4.1-001'
),
'ENST00000623314' => array(
'start' => '73005601',
'end' => '73006141',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.3-001'
),
'ENST00000623725' => array(
'start' => '72496967',
'end' => '72497341',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AC004158.1-201'
),
'ENSMUST00000043896' => array(
'start' => '108714644',
'end' => '108961630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-001'
),
'ENSMUST00000188994' => array(
'start' => '108703100',
'end' => '108800270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-002'
),
'ENSMUST00000175500' => array(
'start' => '108936860',
'end' => '108936938',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir3108-201'
),
'ENSMUST00000175846' => array(
'start' => '108918264',
'end' => '108921874',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20686-001'
),
'ENSMUST00000180382' => array(
'start' => '109075223',
'end' => '109231047',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-201'
),
'ENSMUST00000180524' => array(
'start' => '109075222',
'end' => '109253639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-202'
),
'ENSMUST00000181098' => array(
'start' => '109249866',
'end' => '109273811',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-203'
),
'ENSDART00000114582' => array(
'start' => '70493841',
'end' => '70652401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx3-001'
),
'ENSDART00000119873' => array(
'start' => '70686887',
'end' => '70687001',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.681-201'
),
'ENSDART00000122647' => array(
'start' => '70537229',
'end' => '70537347',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1524-201'
),
'ENSDART00000129981' => array(
'start' => '70777408',
'end' => '70777523',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1700-201'
),
'ENSDART00000128263' => array(
'start' => '70556395',
'end' => '70556512',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1736-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
'ENSG00000140836' => array(
[maximum depth reached]
),
'ENSG00000197445' => array(
[maximum depth reached]
),
'ENSG00000221286' => array(
[maximum depth reached]
),
'ENSG00000225178' => array(
[maximum depth reached]
),
'ENSG00000258582' => array(
[maximum depth reached]
),
'ENSG00000258779' => array(
[maximum depth reached]
),
'ENSG00000259209' => array(
[maximum depth reached]
),
'ENSG00000259768' => array(
[maximum depth reached]
),
'ENSG00000259817' => array(
[maximum depth reached]
),
'ENSG00000259971' => array(
[maximum depth reached]
),
'ENSG00000260664' => array(
[maximum depth reached]
),
'ENSG00000260687' => array(
[maximum depth reached]
),
'ENSG00000260848' => array(
[maximum depth reached]
),
'ENSG00000260880' => array(
[maximum depth reached]
),
'ENSG00000261008' => array(
[maximum depth reached]
),
'ENSG00000261227' => array(
[maximum depth reached]
),
'ENSG00000261764' => array(
[maximum depth reached]
),
'ENSG00000271009' => array(
[maximum depth reached]
),
'ENSG00000272250' => array(
[maximum depth reached]
),
'ENSG00000272330' => array(
[maximum depth reached]
),
'ENSG00000273581' => array(
[maximum depth reached]
),
'ENSG00000279206' => array(
[maximum depth reached]
),
'ENSG00000279591' => array(
[maximum depth reached]
),
'ENSG00000279757' => array(
[maximum depth reached]
),
'ENSG00000280092' => array(
[maximum depth reached]
),
'ENSG00000280264' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Colon',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Breast',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Brain',
(int) 77 => 'Muscle',
(int) 78 => 'Testis',
(int) 79 => 'Adrenal',
(int) 80 => 'Breast',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Breast',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Ovary',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Muscle',
(int) 100 => 'Ovary',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adrenal',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Brain',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adrenal',
(int) 140 => 'Brain',
(int) 141 => 'Colon',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Placenta',
(int) 145 => 'Testis',
(int) 146 => 'Liver',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Breast',
(int) 151 => 'Lung',
(int) 152 => 'Breast',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Muscle',
(int) 163 => 'Ovary',
(int) 164 => 'Placenta',
(int) 165 => 'Colon',
(int) 166 => 'Adrenal',
(int) 167 => 'Brain',
(int) 168 => 'Ovary',
(int) 169 => 'Placenta',
(int) 170 => 'Breast',
(int) 171 => 'Kidney',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Brain',
(int) 189 => 'Colon',
(int) 190 => 'Heart',
(int) 191 => 'Kidney',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Adrenal',
(int) 199 => 'Colon',
(int) 200 => 'Kidney',
(int) 201 => 'Ovary',
(int) 202 => 'Placenta',
(int) 203 => 'Testis',
(int) 204 => 'Adipose',
(int) 205 => 'Colon',
(int) 206 => 'Heart',
(int) 207 => 'Kidney',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Testis',
(int) 216 => 'Adipose',
(int) 217 => 'Adrenal',
(int) 218 => 'Bladder',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Muscle',
(int) 227 => 'Ovary',
(int) 228 => 'Placenta',
(int) 229 => 'Testis',
(int) 230 => 'Adipose',
(int) 231 => 'Adrenal',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Ovary',
(int) 240 => 'Placenta',
(int) 241 => 'Testis',
(int) 242 => 'Adipose',
(int) 243 => 'Adrenal',
(int) 244 => 'Bladder',
(int) 245 => 'Brain',
(int) 246 => 'Breast',
(int) 247 => 'Colon',
(int) 248 => 'Heart',
(int) 249 => 'Kidney',
(int) 250 => 'Liver',
(int) 251 => 'Lung',
(int) 252 => 'Muscle',
(int) 253 => 'Ovary',
(int) 254 => 'Placenta',
(int) 255 => 'Testis',
(int) 256 => 'Adrenal',
(int) 257 => 'Brain',
(int) 258 => 'Breast',
(int) 259 => 'Colon',
(int) 260 => 'Kidney',
(int) 261 => 'Liver',
(int) 262 => 'Lung',
(int) 263 => 'Muscle',
(int) 264 => 'Ovary',
(int) 265 => 'Placenta',
(int) 266 => 'Testis'
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038872' => array(
[maximum depth reached]
),
'ENSMUSG00000093697' => array(
[maximum depth reached]
),
'ENSMUSG00000097393' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Bladder',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Liver',
(int) 35 => 'Ovary'
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
'ENSDARG00000073681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000140836' => 'zinc finger homeobox 3',
'ENSG00000197445' => 'chromosome 16 open reading frame 47',
'ENSG00000207514' => 'RNA, U6 small nuclear 385, pseudogene',
'ENSG00000221286' => null,
'ENSG00000221799' => null,
'ENSG00000225178' => 'ribosomal protein SA pseudogene 56',
'ENSG00000238731' => 'RNA, U7 small nuclear 90 pseudogene',
'ENSG00000251868' => 'RNA, U7 small nuclear 71 pseudogene',
'ENSG00000258582' => null,
'ENSG00000258779' => null,
'ENSG00000259209' => null,
'ENSG00000259768' => null,
'ENSG00000259817' => null,
'ENSG00000259971' => null,
'ENSG00000260664' => null,
'ENSG00000260687' => null,
'ENSG00000260848' => null,
'ENSG00000260880' => 'hepatocellular carcinoma associated transcript 5 (non-protein coding)',
'ENSG00000261008' => null,
'ENSG00000261227' => null,
'ENSG00000261764' => 'keratin 18 pseudogene 18',
'ENSG00000265573' => null,
'ENSG00000271009' => null,
'ENSG00000272250' => null,
'ENSG00000272330' => null,
'ENSG00000273581' => null,
'ENSG00000277431' => null,
'ENSG00000279120' => null,
'ENSG00000279206' => null,
'ENSG00000279591' => null,
'ENSG00000279757' => null,
'ENSG00000280092' => null,
'ENSG00000280264' => null,
'ENSMUSG00000038872' => 'zinc finger homeobox 3',
'ENSMUSG00000093241' => 'microRNA 3108',
'ENSMUSG00000093697' => 'predicted gene 20686',
'ENSMUSG00000097393' => 'RIKEN cDNA D030068K23 gene',
'ENSDARG00000073681' => 'zinc finger homeobox 3',
'ENSDARG00000084473' => '5S ribosomal RNA',
'ENSDARG00000086542' => '5S ribosomal RNA',
'ENSDARG00000088674' => '5S ribosomal RNA',
'ENSDARG00000089126' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000140836' => 'ZFHX3',
'ENSG00000197445' => 'C16orf47',
'ENSG00000207514' => 'RNU6-385P',
'ENSG00000221286' => 'AC092289.1',
'ENSG00000221799' => 'AC132068.1',
'ENSG00000225178' => 'RPSAP56',
'ENSG00000238731' => 'RNU7-90P',
'ENSG00000251868' => 'RNU7-71P',
'ENSG00000258582' => 'RP11-44L9.1',
'ENSG00000258779' => 'RP11-140I24.1',
'ENSG00000259209' => 'RP5-991G20.2',
'ENSG00000259768' => 'RP5-991G20.1',
'ENSG00000259817' => 'RP11-53L24.1',
'ENSG00000259971' => 'RP11-44L9.3',
'ENSG00000260664' => 'AC004158.3',
'ENSG00000260687' => 'RP11-44L9.2',
'ENSG00000260848' => 'CTD-2009A10.1',
'ENSG00000260880' => 'HCCAT5',
'ENSG00000261008' => 'AC004158.2',
'ENSG00000261227' => 'AC140912.1',
'ENSG00000261764' => 'KRT18P18',
'ENSG00000265573' => 'AC004943.1',
'ENSG00000271009' => 'RP11-346C20.3',
'ENSG00000272250' => 'RP11-346C20.4',
'ENSG00000272330' => 'AC002044.4',
'ENSG00000273581' => 'AC092289.2',
'ENSG00000277431' => 'AC009033.1',
'ENSG00000279120' => 'RP11-140I24.2',
'ENSG00000279206' => 'RP5-991G20.6',
'ENSG00000279591' => 'AC002044.1',
'ENSG00000279757' => 'CTD-2326C4.1',
'ENSG00000280092' => 'AC002044.3',
'ENSG00000280264' => 'AC004158.1',
'ENSMUSG00000038872' => 'Zfhx3',
'ENSMUSG00000093241' => 'Mir3108',
'ENSMUSG00000093697' => 'Gm20686',
'ENSMUSG00000097393' => 'D030068K23Rik',
'ENSDARG00000073681' => 'zfhx3',
'ENSDARG00000084473' => '5S_rRNA',
'ENSDARG00000086542' => '5S_rRNA',
'ENSDARG00000088674' => '5S_rRNA',
'ENSDARG00000089126' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '72373211',
'seq_end' => '73946064',
'region_length' => '1572853',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '107891837',
'seq_end' => '109311070',
'region_length' => '1419233',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0003',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '69340894',
'seq_end' => '69341066',
'region_length' => '172',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0004',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '70024018',
'seq_end' => '70024227',
'region_length' => '209',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0005',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '70526719',
'seq_end' => '70818690',
'region_length' => '291971',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0006',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '74167748',
'seq_end' => '74176535',
'region_length' => '8787',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 51 => 'Brain',
(int) 75 => 'Breast',
(int) 100 => 'Colon',
(int) 123 => 'Heart',
(int) 143 => 'Kidney',
(int) 166 => 'Liver',
(int) 190 => 'Lung',
(int) 213 => 'Muscle',
(int) 229 => 'Ovary',
(int) 254 => 'Placenta',
(int) 279 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 60
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000268489' => array(
'start' => '72782885',
'end' => '73048375',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-001'
),
'ENST00000397992' => array(
'start' => '72782885',
'end' => '73059698',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-002'
),
'ENST00000558842' => array(
'start' => '73058881',
'end' => '73059222',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX3-004'
),
'ENST00000563625' => array(
'start' => '72829509',
'end' => '72889834',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX3-003'
),
'ENST00000358463' => array(
'start' => '73126637',
'end' => '73144447',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C16orf47-001'
),
'ENST00000384783' => array(
'start' => '72376704',
'end' => '72376760',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-385P-201'
),
'ENST00000408359' => array(
'start' => '72579542',
'end' => '72579637',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.1-201'
),
'ENST00000408872' => array(
'start' => '72984857',
'end' => '72984954',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC132068.1-201'
),
'ENST00000484897' => array(
'start' => '73940639',
'end' => '73941524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPSAP56-001'
),
'ENST00000459216' => array(
'start' => '72673503',
'end' => '72673564',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-90P-201'
),
'ENST00000516059' => array(
'start' => '72821933',
'end' => '72821992',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-71P-201'
),
'ENST00000557393' => array(
'start' => '73483317',
'end' => '73487744',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.1-001'
),
'ENST00000554640' => array(
'start' => '73387053',
'end' => '73402480',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-002'
),
'ENST00000555721' => array(
'start' => '73386805',
'end' => '73421393',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-001'
),
'ENST00000561875' => array(
'start' => '73387063',
'end' => '73389241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-004'
),
'ENST00000562661' => array(
'start' => '73387053',
'end' => '73421210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-003'
),
'ENST00000558618' => array(
'start' => '72806983',
'end' => '72809639',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-001'
),
'ENST00000620814' => array(
'start' => '72805998',
'end' => '72809872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-003'
),
'ENST00000624370' => array(
'start' => '72807045',
'end' => '72808118',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-004'
),
'ENST00000563328' => array(
'start' => '72665170',
'end' => '72791624',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.1-001'
),
'ENST00000565061' => array(
'start' => '73812621',
'end' => '73816054',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-53L24.1-001'
),
'ENST00000564291' => array(
'start' => '73511176',
'end' => '73511654',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.3-001'
),
'ENST00000564508' => array(
'start' => '72425948',
'end' => '72430266',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-001'
),
'ENST00000624327' => array(
'start' => '72429353',
'end' => '72533892',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-002'
),
'ENST00000562748' => array(
'start' => '73499309',
'end' => '73499763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.2-001'
),
'ENST00000567227' => array(
'start' => '73543941',
'end' => '73558522',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2009A10.1-001'
),
'ENST00000569990' => array(
'start' => '73092349',
'end' => '73093774',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HCCAT5-001'
),
'ENST00000561611' => array(
'start' => '72425485',
'end' => '72665004',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-002'
),
'ENST00000563770' => array(
'start' => '72479751',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-005'
),
'ENST00000563823' => array(
'start' => '72523332',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-006'
),
'ENST00000570035' => array(
'start' => '72522138',
'end' => '72665009',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-001'
),
'ENST00000570152' => array(
'start' => '72570481',
'end' => '72664949',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-004'
),
'ENST00000624829' => array(
'start' => '72283301',
'end' => '72664947',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-007'
),
'ENST00000561802' => array(
'start' => '73232762',
'end' => '73233970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-001'
),
'ENST00000577171' => array(
'start' => '73232055',
'end' => '73233108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-002'
),
'ENST00000565278' => array(
'start' => '72728616',
'end' => '72729894',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KRT18P18-001'
),
'ENST00000584072' => array(
'start' => '72787693',
'end' => '72787773',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004943.1-201'
),
'ENST00000604855' => array(
'start' => '73060470',
'end' => '73062316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.3-001'
),
'ENST00000606272' => array(
'start' => '73060245',
'end' => '73060759',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.4-001'
),
'ENST00000606707' => array(
'start' => '73014319',
'end' => '73014476',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'AC002044.4-001'
),
'ENST00000614764' => array(
'start' => '72607780',
'end' => '72607888',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.2-201'
),
'ENST00000618854' => array(
'start' => '73437113',
'end' => '73437209',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009033.1-201'
),
'ENST00000624279' => array(
'start' => '73293866',
'end' => '73294296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-140I24.2-001'
),
'ENST00000624116' => array(
'start' => '72772673',
'end' => '72773272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-991G20.6-001'
),
'ENST00000624910' => array(
'start' => '73015047',
'end' => '73016016',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.1-001'
),
'ENST00000623805' => array(
'start' => '72973374',
'end' => '72973832',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2326C4.1-001'
),
'ENST00000623314' => array(
'start' => '73005601',
'end' => '73006141',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.3-001'
),
'ENST00000623725' => array(
'start' => '72496967',
'end' => '72497341',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AC004158.1-201'
),
'ENSMUST00000043896' => array(
'start' => '108714644',
'end' => '108961630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-001'
),
'ENSMUST00000188994' => array(
'start' => '108703100',
'end' => '108800270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-002'
),
'ENSMUST00000175500' => array(
'start' => '108936860',
'end' => '108936938',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir3108-201'
),
'ENSMUST00000175846' => array(
'start' => '108918264',
'end' => '108921874',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20686-001'
),
'ENSMUST00000180382' => array(
'start' => '109075223',
'end' => '109231047',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-201'
),
'ENSMUST00000180524' => array(
'start' => '109075222',
'end' => '109253639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-202'
),
'ENSMUST00000181098' => array(
'start' => '109249866',
'end' => '109273811',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-203'
),
'ENSDART00000114582' => array(
'start' => '70493841',
'end' => '70652401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx3-001'
),
'ENSDART00000119873' => array(
'start' => '70686887',
'end' => '70687001',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.681-201'
),
'ENSDART00000122647' => array(
'start' => '70537229',
'end' => '70537347',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1524-201'
),
'ENSDART00000129981' => array(
'start' => '70777408',
'end' => '70777523',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1700-201'
),
'ENSDART00000128263' => array(
'start' => '70556395',
'end' => '70556512',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1736-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
'ENSG00000140836' => array(
[maximum depth reached]
),
'ENSG00000197445' => array(
[maximum depth reached]
),
'ENSG00000221286' => array(
[maximum depth reached]
),
'ENSG00000225178' => array(
[maximum depth reached]
),
'ENSG00000258582' => array(
[maximum depth reached]
),
'ENSG00000258779' => array(
[maximum depth reached]
),
'ENSG00000259209' => array(
[maximum depth reached]
),
'ENSG00000259768' => array(
[maximum depth reached]
),
'ENSG00000259817' => array(
[maximum depth reached]
),
'ENSG00000259971' => array(
[maximum depth reached]
),
'ENSG00000260664' => array(
[maximum depth reached]
),
'ENSG00000260687' => array(
[maximum depth reached]
),
'ENSG00000260848' => array(
[maximum depth reached]
),
'ENSG00000260880' => array(
[maximum depth reached]
),
'ENSG00000261008' => array(
[maximum depth reached]
),
'ENSG00000261227' => array(
[maximum depth reached]
),
'ENSG00000261764' => array(
[maximum depth reached]
),
'ENSG00000271009' => array(
[maximum depth reached]
),
'ENSG00000272250' => array(
[maximum depth reached]
),
'ENSG00000272330' => array(
[maximum depth reached]
),
'ENSG00000273581' => array(
[maximum depth reached]
),
'ENSG00000279206' => array(
[maximum depth reached]
),
'ENSG00000279591' => array(
[maximum depth reached]
),
'ENSG00000279757' => array(
[maximum depth reached]
),
'ENSG00000280092' => array(
[maximum depth reached]
),
'ENSG00000280264' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Colon',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Breast',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Brain',
(int) 77 => 'Muscle',
(int) 78 => 'Testis',
(int) 79 => 'Adrenal',
(int) 80 => 'Breast',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Breast',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Ovary',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Muscle',
(int) 100 => 'Ovary',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adrenal',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Brain',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adrenal',
(int) 140 => 'Brain',
(int) 141 => 'Colon',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Placenta',
(int) 145 => 'Testis',
(int) 146 => 'Liver',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Breast',
(int) 151 => 'Lung',
(int) 152 => 'Breast',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Muscle',
(int) 163 => 'Ovary',
(int) 164 => 'Placenta',
(int) 165 => 'Colon',
(int) 166 => 'Adrenal',
(int) 167 => 'Brain',
(int) 168 => 'Ovary',
(int) 169 => 'Placenta',
(int) 170 => 'Breast',
(int) 171 => 'Kidney',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Brain',
(int) 189 => 'Colon',
(int) 190 => 'Heart',
(int) 191 => 'Kidney',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Adrenal',
(int) 199 => 'Colon',
(int) 200 => 'Kidney',
(int) 201 => 'Ovary',
(int) 202 => 'Placenta',
(int) 203 => 'Testis',
(int) 204 => 'Adipose',
(int) 205 => 'Colon',
(int) 206 => 'Heart',
(int) 207 => 'Kidney',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Testis',
(int) 216 => 'Adipose',
(int) 217 => 'Adrenal',
(int) 218 => 'Bladder',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Muscle',
(int) 227 => 'Ovary',
(int) 228 => 'Placenta',
(int) 229 => 'Testis',
(int) 230 => 'Adipose',
(int) 231 => 'Adrenal',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Ovary',
(int) 240 => 'Placenta',
(int) 241 => 'Testis',
(int) 242 => 'Adipose',
(int) 243 => 'Adrenal',
(int) 244 => 'Bladder',
(int) 245 => 'Brain',
(int) 246 => 'Breast',
(int) 247 => 'Colon',
(int) 248 => 'Heart',
(int) 249 => 'Kidney',
(int) 250 => 'Liver',
(int) 251 => 'Lung',
(int) 252 => 'Muscle',
(int) 253 => 'Ovary',
(int) 254 => 'Placenta',
(int) 255 => 'Testis',
(int) 256 => 'Adrenal',
(int) 257 => 'Brain',
(int) 258 => 'Breast',
(int) 259 => 'Colon',
(int) 260 => 'Kidney',
(int) 261 => 'Liver',
(int) 262 => 'Lung',
(int) 263 => 'Muscle',
(int) 264 => 'Ovary',
(int) 265 => 'Placenta',
(int) 266 => 'Testis'
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038872' => array(
[maximum depth reached]
),
'ENSMUSG00000093697' => array(
[maximum depth reached]
),
'ENSMUSG00000097393' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Bladder',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Liver',
(int) 35 => 'Ovary'
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
'ENSDARG00000073681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0003',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '69340894',
'seq_end' => '69341066',
'region_length' => '172',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
)
$gene_el = array(
'ENSMUST00000180382' => array(
'Liver' => array(
'average_FPKM' => '0.006',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.017',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.03'
),
'Placenta' => array(
'average_FPKM' => '0.012',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000180524' => array(
'Bladder' => array(
'average_FPKM' => '0.002',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.03'
)
),
'ENSMUST00000181098' => array(
'Liver' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.102',
'stddev_FPKM' => '0.07'
)
)
)
$gene_key = 'ENSMUSG00000097393'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.102',
'stddev_FPKM' => '0.07'
)
)
$tran_key = 'ENSMUST00000181098'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000140836' => 'zinc finger homeobox 3',
'ENSG00000197445' => 'chromosome 16 open reading frame 47',
'ENSG00000207514' => 'RNA, U6 small nuclear 385, pseudogene',
'ENSG00000221286' => null,
'ENSG00000221799' => null,
'ENSG00000225178' => 'ribosomal protein SA pseudogene 56',
'ENSG00000238731' => 'RNA, U7 small nuclear 90 pseudogene',
'ENSG00000251868' => 'RNA, U7 small nuclear 71 pseudogene',
'ENSG00000258582' => null,
'ENSG00000258779' => null,
'ENSG00000259209' => null,
'ENSG00000259768' => null,
'ENSG00000259817' => null,
'ENSG00000259971' => null,
'ENSG00000260664' => null,
'ENSG00000260687' => null,
'ENSG00000260848' => null,
'ENSG00000260880' => 'hepatocellular carcinoma associated transcript 5 (non-protein coding)',
'ENSG00000261008' => null,
'ENSG00000261227' => null,
'ENSG00000261764' => 'keratin 18 pseudogene 18',
'ENSG00000265573' => null,
'ENSG00000271009' => null,
'ENSG00000272250' => null,
'ENSG00000272330' => null,
'ENSG00000273581' => null,
'ENSG00000277431' => null,
'ENSG00000279120' => null,
'ENSG00000279206' => null,
'ENSG00000279591' => null,
'ENSG00000279757' => null,
'ENSG00000280092' => null,
'ENSG00000280264' => null,
'ENSMUSG00000038872' => 'zinc finger homeobox 3',
'ENSMUSG00000093241' => 'microRNA 3108',
'ENSMUSG00000093697' => 'predicted gene 20686',
'ENSMUSG00000097393' => 'RIKEN cDNA D030068K23 gene',
'ENSDARG00000073681' => 'zinc finger homeobox 3',
'ENSDARG00000084473' => '5S ribosomal RNA',
'ENSDARG00000086542' => '5S ribosomal RNA',
'ENSDARG00000088674' => '5S ribosomal RNA',
'ENSDARG00000089126' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000140836' => 'ZFHX3',
'ENSG00000197445' => 'C16orf47',
'ENSG00000207514' => 'RNU6-385P',
'ENSG00000221286' => 'AC092289.1',
'ENSG00000221799' => 'AC132068.1',
'ENSG00000225178' => 'RPSAP56',
'ENSG00000238731' => 'RNU7-90P',
'ENSG00000251868' => 'RNU7-71P',
'ENSG00000258582' => 'RP11-44L9.1',
'ENSG00000258779' => 'RP11-140I24.1',
'ENSG00000259209' => 'RP5-991G20.2',
'ENSG00000259768' => 'RP5-991G20.1',
'ENSG00000259817' => 'RP11-53L24.1',
'ENSG00000259971' => 'RP11-44L9.3',
'ENSG00000260664' => 'AC004158.3',
'ENSG00000260687' => 'RP11-44L9.2',
'ENSG00000260848' => 'CTD-2009A10.1',
'ENSG00000260880' => 'HCCAT5',
'ENSG00000261008' => 'AC004158.2',
'ENSG00000261227' => 'AC140912.1',
'ENSG00000261764' => 'KRT18P18',
'ENSG00000265573' => 'AC004943.1',
'ENSG00000271009' => 'RP11-346C20.3',
'ENSG00000272250' => 'RP11-346C20.4',
'ENSG00000272330' => 'AC002044.4',
'ENSG00000273581' => 'AC092289.2',
'ENSG00000277431' => 'AC009033.1',
'ENSG00000279120' => 'RP11-140I24.2',
'ENSG00000279206' => 'RP5-991G20.6',
'ENSG00000279591' => 'AC002044.1',
'ENSG00000279757' => 'CTD-2326C4.1',
'ENSG00000280092' => 'AC002044.3',
'ENSG00000280264' => 'AC004158.1',
'ENSMUSG00000038872' => 'Zfhx3',
'ENSMUSG00000093241' => 'Mir3108',
'ENSMUSG00000093697' => 'Gm20686',
'ENSMUSG00000097393' => 'D030068K23Rik',
'ENSDARG00000073681' => 'zfhx3',
'ENSDARG00000084473' => '5S_rRNA',
'ENSDARG00000086542' => '5S_rRNA',
'ENSDARG00000088674' => '5S_rRNA',
'ENSDARG00000089126' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 51 => 'Brain',
(int) 75 => 'Breast',
(int) 100 => 'Colon',
(int) 123 => 'Heart',
(int) 143 => 'Kidney',
(int) 166 => 'Liver',
(int) 190 => 'Lung',
(int) 213 => 'Muscle',
(int) 229 => 'Ovary',
(int) 254 => 'Placenta',
(int) 279 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 60,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000268489' => array(
'start' => '72782885',
'end' => '73048375',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-001'
),
'ENST00000397992' => array(
'start' => '72782885',
'end' => '73059698',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-002'
),
'ENST00000558842' => array(
'start' => '73058881',
'end' => '73059222',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX3-004'
),
'ENST00000563625' => array(
'start' => '72829509',
'end' => '72889834',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX3-003'
),
'ENST00000358463' => array(
'start' => '73126637',
'end' => '73144447',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C16orf47-001'
),
'ENST00000384783' => array(
'start' => '72376704',
'end' => '72376760',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-385P-201'
),
'ENST00000408359' => array(
'start' => '72579542',
'end' => '72579637',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.1-201'
),
'ENST00000408872' => array(
'start' => '72984857',
'end' => '72984954',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC132068.1-201'
),
'ENST00000484897' => array(
'start' => '73940639',
'end' => '73941524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPSAP56-001'
),
'ENST00000459216' => array(
'start' => '72673503',
'end' => '72673564',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-90P-201'
),
'ENST00000516059' => array(
'start' => '72821933',
'end' => '72821992',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-71P-201'
),
'ENST00000557393' => array(
'start' => '73483317',
'end' => '73487744',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.1-001'
),
'ENST00000554640' => array(
'start' => '73387053',
'end' => '73402480',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-002'
),
'ENST00000555721' => array(
'start' => '73386805',
'end' => '73421393',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-001'
),
'ENST00000561875' => array(
'start' => '73387063',
'end' => '73389241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-004'
),
'ENST00000562661' => array(
'start' => '73387053',
'end' => '73421210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-003'
),
'ENST00000558618' => array(
'start' => '72806983',
'end' => '72809639',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-001'
),
'ENST00000620814' => array(
'start' => '72805998',
'end' => '72809872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-003'
),
'ENST00000624370' => array(
'start' => '72807045',
'end' => '72808118',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-004'
),
'ENST00000563328' => array(
'start' => '72665170',
'end' => '72791624',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.1-001'
),
'ENST00000565061' => array(
'start' => '73812621',
'end' => '73816054',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-53L24.1-001'
),
'ENST00000564291' => array(
'start' => '73511176',
'end' => '73511654',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.3-001'
),
'ENST00000564508' => array(
'start' => '72425948',
'end' => '72430266',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-001'
),
'ENST00000624327' => array(
'start' => '72429353',
'end' => '72533892',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-002'
),
'ENST00000562748' => array(
'start' => '73499309',
'end' => '73499763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.2-001'
),
'ENST00000567227' => array(
'start' => '73543941',
'end' => '73558522',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2009A10.1-001'
),
'ENST00000569990' => array(
'start' => '73092349',
'end' => '73093774',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HCCAT5-001'
),
'ENST00000561611' => array(
'start' => '72425485',
'end' => '72665004',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-002'
),
'ENST00000563770' => array(
'start' => '72479751',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-005'
),
'ENST00000563823' => array(
'start' => '72523332',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-006'
),
'ENST00000570035' => array(
'start' => '72522138',
'end' => '72665009',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-001'
),
'ENST00000570152' => array(
'start' => '72570481',
'end' => '72664949',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-004'
),
'ENST00000624829' => array(
'start' => '72283301',
'end' => '72664947',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-007'
),
'ENST00000561802' => array(
'start' => '73232762',
'end' => '73233970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-001'
),
'ENST00000577171' => array(
'start' => '73232055',
'end' => '73233108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-002'
),
'ENST00000565278' => array(
'start' => '72728616',
'end' => '72729894',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KRT18P18-001'
),
'ENST00000584072' => array(
'start' => '72787693',
'end' => '72787773',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004943.1-201'
),
'ENST00000604855' => array(
'start' => '73060470',
'end' => '73062316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.3-001'
),
'ENST00000606272' => array(
'start' => '73060245',
'end' => '73060759',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.4-001'
),
'ENST00000606707' => array(
'start' => '73014319',
'end' => '73014476',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'AC002044.4-001'
),
'ENST00000614764' => array(
'start' => '72607780',
'end' => '72607888',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.2-201'
),
'ENST00000618854' => array(
'start' => '73437113',
'end' => '73437209',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009033.1-201'
),
'ENST00000624279' => array(
'start' => '73293866',
'end' => '73294296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-140I24.2-001'
),
'ENST00000624116' => array(
'start' => '72772673',
'end' => '72773272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-991G20.6-001'
),
'ENST00000624910' => array(
'start' => '73015047',
'end' => '73016016',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.1-001'
),
'ENST00000623805' => array(
'start' => '72973374',
'end' => '72973832',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2326C4.1-001'
),
'ENST00000623314' => array(
'start' => '73005601',
'end' => '73006141',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.3-001'
),
'ENST00000623725' => array(
'start' => '72496967',
'end' => '72497341',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AC004158.1-201'
),
'ENSMUST00000043896' => array(
'start' => '108714644',
'end' => '108961630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-001'
),
'ENSMUST00000188994' => array(
'start' => '108703100',
'end' => '108800270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-002'
),
'ENSMUST00000175500' => array(
'start' => '108936860',
'end' => '108936938',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir3108-201'
),
'ENSMUST00000175846' => array(
'start' => '108918264',
'end' => '108921874',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20686-001'
),
'ENSMUST00000180382' => array(
'start' => '109075223',
'end' => '109231047',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-201'
),
'ENSMUST00000180524' => array(
'start' => '109075222',
'end' => '109253639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-202'
),
'ENSMUST00000181098' => array(
'start' => '109249866',
'end' => '109273811',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-203'
),
'ENSDART00000114582' => array(
'start' => '70493841',
'end' => '70652401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx3-001'
),
'ENSDART00000119873' => array(
'start' => '70686887',
'end' => '70687001',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.681-201'
),
'ENSDART00000122647' => array(
'start' => '70537229',
'end' => '70537347',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1524-201'
),
'ENSDART00000129981' => array(
'start' => '70777408',
'end' => '70777523',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1700-201'
),
'ENSDART00000128263' => array(
'start' => '70556395',
'end' => '70556512',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1736-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
'ENSG00000140836' => array(
[maximum depth reached]
),
'ENSG00000197445' => array(
[maximum depth reached]
),
'ENSG00000221286' => array(
[maximum depth reached]
),
'ENSG00000225178' => array(
[maximum depth reached]
),
'ENSG00000258582' => array(
[maximum depth reached]
),
'ENSG00000258779' => array(
[maximum depth reached]
),
'ENSG00000259209' => array(
[maximum depth reached]
),
'ENSG00000259768' => array(
[maximum depth reached]
),
'ENSG00000259817' => array(
[maximum depth reached]
),
'ENSG00000259971' => array(
[maximum depth reached]
),
'ENSG00000260664' => array(
[maximum depth reached]
),
'ENSG00000260687' => array(
[maximum depth reached]
),
'ENSG00000260848' => array(
[maximum depth reached]
),
'ENSG00000260880' => array(
[maximum depth reached]
),
'ENSG00000261008' => array(
[maximum depth reached]
),
'ENSG00000261227' => array(
[maximum depth reached]
),
'ENSG00000261764' => array(
[maximum depth reached]
),
'ENSG00000271009' => array(
[maximum depth reached]
),
'ENSG00000272250' => array(
[maximum depth reached]
),
'ENSG00000272330' => array(
[maximum depth reached]
),
'ENSG00000273581' => array(
[maximum depth reached]
),
'ENSG00000279206' => array(
[maximum depth reached]
),
'ENSG00000279591' => array(
[maximum depth reached]
),
'ENSG00000279757' => array(
[maximum depth reached]
),
'ENSG00000280092' => array(
[maximum depth reached]
),
'ENSG00000280264' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Colon',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Breast',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Brain',
(int) 77 => 'Muscle',
(int) 78 => 'Testis',
(int) 79 => 'Adrenal',
(int) 80 => 'Breast',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Breast',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Ovary',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Muscle',
(int) 100 => 'Ovary',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adrenal',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Brain',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adrenal',
(int) 140 => 'Brain',
(int) 141 => 'Colon',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Placenta',
(int) 145 => 'Testis',
(int) 146 => 'Liver',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Breast',
(int) 151 => 'Lung',
(int) 152 => 'Breast',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Muscle',
(int) 163 => 'Ovary',
(int) 164 => 'Placenta',
(int) 165 => 'Colon',
(int) 166 => 'Adrenal',
(int) 167 => 'Brain',
(int) 168 => 'Ovary',
(int) 169 => 'Placenta',
(int) 170 => 'Breast',
(int) 171 => 'Kidney',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Brain',
(int) 189 => 'Colon',
(int) 190 => 'Heart',
(int) 191 => 'Kidney',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Adrenal',
(int) 199 => 'Colon',
(int) 200 => 'Kidney',
(int) 201 => 'Ovary',
(int) 202 => 'Placenta',
(int) 203 => 'Testis',
(int) 204 => 'Adipose',
(int) 205 => 'Colon',
(int) 206 => 'Heart',
(int) 207 => 'Kidney',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Testis',
(int) 216 => 'Adipose',
(int) 217 => 'Adrenal',
(int) 218 => 'Bladder',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Muscle',
(int) 227 => 'Ovary',
(int) 228 => 'Placenta',
(int) 229 => 'Testis',
(int) 230 => 'Adipose',
(int) 231 => 'Adrenal',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Ovary',
(int) 240 => 'Placenta',
(int) 241 => 'Testis',
(int) 242 => 'Adipose',
(int) 243 => 'Adrenal',
(int) 244 => 'Bladder',
(int) 245 => 'Brain',
(int) 246 => 'Breast',
(int) 247 => 'Colon',
(int) 248 => 'Heart',
(int) 249 => 'Kidney',
(int) 250 => 'Liver',
(int) 251 => 'Lung',
(int) 252 => 'Muscle',
(int) 253 => 'Ovary',
(int) 254 => 'Placenta',
(int) 255 => 'Testis',
(int) 256 => 'Adrenal',
(int) 257 => 'Brain',
(int) 258 => 'Breast',
(int) 259 => 'Colon',
(int) 260 => 'Kidney',
(int) 261 => 'Liver',
(int) 262 => 'Lung',
(int) 263 => 'Muscle',
(int) 264 => 'Ovary',
(int) 265 => 'Placenta',
(int) 266 => 'Testis'
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038872' => array(
[maximum depth reached]
),
'ENSMUSG00000093697' => array(
[maximum depth reached]
),
'ENSMUSG00000097393' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Bladder',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Liver',
(int) 35 => 'Ovary'
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
'ENSDARG00000073681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000140836' => 'zinc finger homeobox 3',
'ENSG00000197445' => 'chromosome 16 open reading frame 47',
'ENSG00000207514' => 'RNA, U6 small nuclear 385, pseudogene',
'ENSG00000221286' => null,
'ENSG00000221799' => null,
'ENSG00000225178' => 'ribosomal protein SA pseudogene 56',
'ENSG00000238731' => 'RNA, U7 small nuclear 90 pseudogene',
'ENSG00000251868' => 'RNA, U7 small nuclear 71 pseudogene',
'ENSG00000258582' => null,
'ENSG00000258779' => null,
'ENSG00000259209' => null,
'ENSG00000259768' => null,
'ENSG00000259817' => null,
'ENSG00000259971' => null,
'ENSG00000260664' => null,
'ENSG00000260687' => null,
'ENSG00000260848' => null,
'ENSG00000260880' => 'hepatocellular carcinoma associated transcript 5 (non-protein coding)',
'ENSG00000261008' => null,
'ENSG00000261227' => null,
'ENSG00000261764' => 'keratin 18 pseudogene 18',
'ENSG00000265573' => null,
'ENSG00000271009' => null,
'ENSG00000272250' => null,
'ENSG00000272330' => null,
'ENSG00000273581' => null,
'ENSG00000277431' => null,
'ENSG00000279120' => null,
'ENSG00000279206' => null,
'ENSG00000279591' => null,
'ENSG00000279757' => null,
'ENSG00000280092' => null,
'ENSG00000280264' => null,
'ENSMUSG00000038872' => 'zinc finger homeobox 3',
'ENSMUSG00000093241' => 'microRNA 3108',
'ENSMUSG00000093697' => 'predicted gene 20686',
'ENSMUSG00000097393' => 'RIKEN cDNA D030068K23 gene',
'ENSDARG00000073681' => 'zinc finger homeobox 3',
'ENSDARG00000084473' => '5S ribosomal RNA',
'ENSDARG00000086542' => '5S ribosomal RNA',
'ENSDARG00000088674' => '5S ribosomal RNA',
'ENSDARG00000089126' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000140836' => 'ZFHX3',
'ENSG00000197445' => 'C16orf47',
'ENSG00000207514' => 'RNU6-385P',
'ENSG00000221286' => 'AC092289.1',
'ENSG00000221799' => 'AC132068.1',
'ENSG00000225178' => 'RPSAP56',
'ENSG00000238731' => 'RNU7-90P',
'ENSG00000251868' => 'RNU7-71P',
'ENSG00000258582' => 'RP11-44L9.1',
'ENSG00000258779' => 'RP11-140I24.1',
'ENSG00000259209' => 'RP5-991G20.2',
'ENSG00000259768' => 'RP5-991G20.1',
'ENSG00000259817' => 'RP11-53L24.1',
'ENSG00000259971' => 'RP11-44L9.3',
'ENSG00000260664' => 'AC004158.3',
'ENSG00000260687' => 'RP11-44L9.2',
'ENSG00000260848' => 'CTD-2009A10.1',
'ENSG00000260880' => 'HCCAT5',
'ENSG00000261008' => 'AC004158.2',
'ENSG00000261227' => 'AC140912.1',
'ENSG00000261764' => 'KRT18P18',
'ENSG00000265573' => 'AC004943.1',
'ENSG00000271009' => 'RP11-346C20.3',
'ENSG00000272250' => 'RP11-346C20.4',
'ENSG00000272330' => 'AC002044.4',
'ENSG00000273581' => 'AC092289.2',
'ENSG00000277431' => 'AC009033.1',
'ENSG00000279120' => 'RP11-140I24.2',
'ENSG00000279206' => 'RP5-991G20.6',
'ENSG00000279591' => 'AC002044.1',
'ENSG00000279757' => 'CTD-2326C4.1',
'ENSG00000280092' => 'AC002044.3',
'ENSG00000280264' => 'AC004158.1',
'ENSMUSG00000038872' => 'Zfhx3',
'ENSMUSG00000093241' => 'Mir3108',
'ENSMUSG00000093697' => 'Gm20686',
'ENSMUSG00000097393' => 'D030068K23Rik',
'ENSDARG00000073681' => 'zfhx3',
'ENSDARG00000084473' => '5S_rRNA',
'ENSDARG00000086542' => '5S_rRNA',
'ENSDARG00000088674' => '5S_rRNA',
'ENSDARG00000089126' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '72373211',
'seq_end' => '73946064',
'region_length' => '1572853',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '107891837',
'seq_end' => '109311070',
'region_length' => '1419233',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0003',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '69340894',
'seq_end' => '69341066',
'region_length' => '172',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0004',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '70024018',
'seq_end' => '70024227',
'region_length' => '209',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0005',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '70526719',
'seq_end' => '70818690',
'region_length' => '291971',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0006',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '74167748',
'seq_end' => '74176535',
'region_length' => '8787',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 51 => 'Brain',
(int) 75 => 'Breast',
(int) 100 => 'Colon',
(int) 123 => 'Heart',
(int) 143 => 'Kidney',
(int) 166 => 'Liver',
(int) 190 => 'Lung',
(int) 213 => 'Muscle',
(int) 229 => 'Ovary',
(int) 254 => 'Placenta',
(int) 279 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 60
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000268489' => array(
'start' => '72782885',
'end' => '73048375',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-001'
),
'ENST00000397992' => array(
'start' => '72782885',
'end' => '73059698',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX3-002'
),
'ENST00000558842' => array(
'start' => '73058881',
'end' => '73059222',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX3-004'
),
'ENST00000563625' => array(
'start' => '72829509',
'end' => '72889834',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX3-003'
),
'ENST00000358463' => array(
'start' => '73126637',
'end' => '73144447',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C16orf47-001'
),
'ENST00000384783' => array(
'start' => '72376704',
'end' => '72376760',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-385P-201'
),
'ENST00000408359' => array(
'start' => '72579542',
'end' => '72579637',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.1-201'
),
'ENST00000408872' => array(
'start' => '72984857',
'end' => '72984954',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC132068.1-201'
),
'ENST00000484897' => array(
'start' => '73940639',
'end' => '73941524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPSAP56-001'
),
'ENST00000459216' => array(
'start' => '72673503',
'end' => '72673564',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-90P-201'
),
'ENST00000516059' => array(
'start' => '72821933',
'end' => '72821992',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-71P-201'
),
'ENST00000557393' => array(
'start' => '73483317',
'end' => '73487744',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.1-001'
),
'ENST00000554640' => array(
'start' => '73387053',
'end' => '73402480',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-002'
),
'ENST00000555721' => array(
'start' => '73386805',
'end' => '73421393',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-001'
),
'ENST00000561875' => array(
'start' => '73387063',
'end' => '73389241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-004'
),
'ENST00000562661' => array(
'start' => '73387053',
'end' => '73421210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-140I24.1-003'
),
'ENST00000558618' => array(
'start' => '72806983',
'end' => '72809639',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-001'
),
'ENST00000620814' => array(
'start' => '72805998',
'end' => '72809872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-003'
),
'ENST00000624370' => array(
'start' => '72807045',
'end' => '72808118',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.2-004'
),
'ENST00000563328' => array(
'start' => '72665170',
'end' => '72791624',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-991G20.1-001'
),
'ENST00000565061' => array(
'start' => '73812621',
'end' => '73816054',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-53L24.1-001'
),
'ENST00000564291' => array(
'start' => '73511176',
'end' => '73511654',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.3-001'
),
'ENST00000564508' => array(
'start' => '72425948',
'end' => '72430266',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-001'
),
'ENST00000624327' => array(
'start' => '72429353',
'end' => '72533892',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.3-002'
),
'ENST00000562748' => array(
'start' => '73499309',
'end' => '73499763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-44L9.2-001'
),
'ENST00000567227' => array(
'start' => '73543941',
'end' => '73558522',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2009A10.1-001'
),
'ENST00000569990' => array(
'start' => '73092349',
'end' => '73093774',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HCCAT5-001'
),
'ENST00000561611' => array(
'start' => '72425485',
'end' => '72665004',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-002'
),
'ENST00000563770' => array(
'start' => '72479751',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-005'
),
'ENST00000563823' => array(
'start' => '72523332',
'end' => '72627686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-006'
),
'ENST00000570035' => array(
'start' => '72522138',
'end' => '72665009',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-001'
),
'ENST00000570152' => array(
'start' => '72570481',
'end' => '72664949',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-004'
),
'ENST00000624829' => array(
'start' => '72283301',
'end' => '72664947',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC004158.2-007'
),
'ENST00000561802' => array(
'start' => '73232762',
'end' => '73233970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-001'
),
'ENST00000577171' => array(
'start' => '73232055',
'end' => '73233108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC140912.1-002'
),
'ENST00000565278' => array(
'start' => '72728616',
'end' => '72729894',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KRT18P18-001'
),
'ENST00000584072' => array(
'start' => '72787693',
'end' => '72787773',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004943.1-201'
),
'ENST00000604855' => array(
'start' => '73060470',
'end' => '73062316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.3-001'
),
'ENST00000606272' => array(
'start' => '73060245',
'end' => '73060759',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-346C20.4-001'
),
'ENST00000606707' => array(
'start' => '73014319',
'end' => '73014476',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'AC002044.4-001'
),
'ENST00000614764' => array(
'start' => '72607780',
'end' => '72607888',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092289.2-201'
),
'ENST00000618854' => array(
'start' => '73437113',
'end' => '73437209',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009033.1-201'
),
'ENST00000624279' => array(
'start' => '73293866',
'end' => '73294296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-140I24.2-001'
),
'ENST00000624116' => array(
'start' => '72772673',
'end' => '72773272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-991G20.6-001'
),
'ENST00000624910' => array(
'start' => '73015047',
'end' => '73016016',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.1-001'
),
'ENST00000623805' => array(
'start' => '72973374',
'end' => '72973832',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2326C4.1-001'
),
'ENST00000623314' => array(
'start' => '73005601',
'end' => '73006141',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AC002044.3-001'
),
'ENST00000623725' => array(
'start' => '72496967',
'end' => '72497341',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AC004158.1-201'
),
'ENSMUST00000043896' => array(
'start' => '108714644',
'end' => '108961630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-001'
),
'ENSMUST00000188994' => array(
'start' => '108703100',
'end' => '108800270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx3-002'
),
'ENSMUST00000175500' => array(
'start' => '108936860',
'end' => '108936938',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir3108-201'
),
'ENSMUST00000175846' => array(
'start' => '108918264',
'end' => '108921874',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20686-001'
),
'ENSMUST00000180382' => array(
'start' => '109075223',
'end' => '109231047',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-201'
),
'ENSMUST00000180524' => array(
'start' => '109075222',
'end' => '109253639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-202'
),
'ENSMUST00000181098' => array(
'start' => '109249866',
'end' => '109273811',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D030068K23Rik-203'
),
'ENSDART00000114582' => array(
'start' => '70493841',
'end' => '70652401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx3-001'
),
'ENSDART00000119873' => array(
'start' => '70686887',
'end' => '70687001',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.681-201'
),
'ENSDART00000122647' => array(
'start' => '70537229',
'end' => '70537347',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1524-201'
),
'ENSDART00000129981' => array(
'start' => '70777408',
'end' => '70777523',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1700-201'
),
'ENSDART00000128263' => array(
'start' => '70556395',
'end' => '70556512',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1736-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KL_0001' => array(
'genes_in_region' => array(
'ENSG00000140836' => array(
[maximum depth reached]
),
'ENSG00000197445' => array(
[maximum depth reached]
),
'ENSG00000221286' => array(
[maximum depth reached]
),
'ENSG00000225178' => array(
[maximum depth reached]
),
'ENSG00000258582' => array(
[maximum depth reached]
),
'ENSG00000258779' => array(
[maximum depth reached]
),
'ENSG00000259209' => array(
[maximum depth reached]
),
'ENSG00000259768' => array(
[maximum depth reached]
),
'ENSG00000259817' => array(
[maximum depth reached]
),
'ENSG00000259971' => array(
[maximum depth reached]
),
'ENSG00000260664' => array(
[maximum depth reached]
),
'ENSG00000260687' => array(
[maximum depth reached]
),
'ENSG00000260848' => array(
[maximum depth reached]
),
'ENSG00000260880' => array(
[maximum depth reached]
),
'ENSG00000261008' => array(
[maximum depth reached]
),
'ENSG00000261227' => array(
[maximum depth reached]
),
'ENSG00000261764' => array(
[maximum depth reached]
),
'ENSG00000271009' => array(
[maximum depth reached]
),
'ENSG00000272250' => array(
[maximum depth reached]
),
'ENSG00000272330' => array(
[maximum depth reached]
),
'ENSG00000273581' => array(
[maximum depth reached]
),
'ENSG00000279206' => array(
[maximum depth reached]
),
'ENSG00000279591' => array(
[maximum depth reached]
),
'ENSG00000279757' => array(
[maximum depth reached]
),
'ENSG00000280092' => array(
[maximum depth reached]
),
'ENSG00000280264' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Lung',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Colon',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Breast',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Brain',
(int) 77 => 'Muscle',
(int) 78 => 'Testis',
(int) 79 => 'Adrenal',
(int) 80 => 'Breast',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Breast',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Ovary',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Muscle',
(int) 100 => 'Ovary',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Lung',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adrenal',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Brain',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adrenal',
(int) 140 => 'Brain',
(int) 141 => 'Colon',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Placenta',
(int) 145 => 'Testis',
(int) 146 => 'Liver',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Breast',
(int) 151 => 'Lung',
(int) 152 => 'Breast',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Muscle',
(int) 163 => 'Ovary',
(int) 164 => 'Placenta',
(int) 165 => 'Colon',
(int) 166 => 'Adrenal',
(int) 167 => 'Brain',
(int) 168 => 'Ovary',
(int) 169 => 'Placenta',
(int) 170 => 'Breast',
(int) 171 => 'Kidney',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Brain',
(int) 189 => 'Colon',
(int) 190 => 'Heart',
(int) 191 => 'Kidney',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Adrenal',
(int) 199 => 'Colon',
(int) 200 => 'Kidney',
(int) 201 => 'Ovary',
(int) 202 => 'Placenta',
(int) 203 => 'Testis',
(int) 204 => 'Adipose',
(int) 205 => 'Colon',
(int) 206 => 'Heart',
(int) 207 => 'Kidney',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Testis',
(int) 216 => 'Adipose',
(int) 217 => 'Adrenal',
(int) 218 => 'Bladder',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Muscle',
(int) 227 => 'Ovary',
(int) 228 => 'Placenta',
(int) 229 => 'Testis',
(int) 230 => 'Adipose',
(int) 231 => 'Adrenal',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Ovary',
(int) 240 => 'Placenta',
(int) 241 => 'Testis',
(int) 242 => 'Adipose',
(int) 243 => 'Adrenal',
(int) 244 => 'Bladder',
(int) 245 => 'Brain',
(int) 246 => 'Breast',
(int) 247 => 'Colon',
(int) 248 => 'Heart',
(int) 249 => 'Kidney',
(int) 250 => 'Liver',
(int) 251 => 'Lung',
(int) 252 => 'Muscle',
(int) 253 => 'Ovary',
(int) 254 => 'Placenta',
(int) 255 => 'Testis',
(int) 256 => 'Adrenal',
(int) 257 => 'Brain',
(int) 258 => 'Breast',
(int) 259 => 'Colon',
(int) 260 => 'Kidney',
(int) 261 => 'Liver',
(int) 262 => 'Lung',
(int) 263 => 'Muscle',
(int) 264 => 'Ovary',
(int) 265 => 'Placenta',
(int) 266 => 'Testis'
)
),
'CIL_0007KL_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038872' => array(
[maximum depth reached]
),
'ENSMUSG00000093697' => array(
[maximum depth reached]
),
'ENSMUSG00000097393' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Bladder',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Liver',
(int) 35 => 'Ovary'
)
),
'CIL_0007KL_0005' => array(
'genes_in_region' => array(
'ENSDARG00000073681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KL_0003',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '69340894',
'seq_end' => '69341066',
'region_length' => '172',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX3'
)
)
$gene_el = array(
'ENSMUST00000180382' => array(
'Liver' => array(
'average_FPKM' => '0.006',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.017',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.03'
),
'Placenta' => array(
'average_FPKM' => '0.012',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000180524' => array(
'Bladder' => array(
'average_FPKM' => '0.002',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.03'
)
),
'ENSMUST00000181098' => array(
'Liver' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.102',
'stddev_FPKM' => '0.07'
)
)
)
$gene_key = 'ENSMUSG00000097393'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.102',
'stddev_FPKM' => '0.07'
)
)
$tran_key = 'ENSMUST00000181098'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| ZFHX3 |
UCNEbase |
7955 |
7:69340894-69341066  |
| Gene | Transcript | Position | Biotype |
|---|
(ZFHX3)