| Source ID |
Type |
Tax ID |
Position |
| TSHZ2 |
UCNEbase |
7955 |
Zv9_NA847:11432-12024  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007L0_0006 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182463' => 'teashirt zinc finger homeobox 2',
'ENSG00000199218' => 'RNA, 7SK small nuclear pseudogene 184',
'ENSG00000223492' => null,
'ENSG00000225785' => null,
'ENSG00000227705' => null,
'ENSG00000230636' => 'ribosomal protein L36 pseudogene 1',
'ENSG00000232286' => null,
'ENSG00000232294' => null,
'ENSG00000232465' => null,
'ENSG00000234821' => 'mitochondrial ribosomal protein S33 pseudogene 4',
'ENSG00000234948' => 'long intergenic non-protein coding RNA 1524',
'ENSG00000252629' => null,
'ENSG00000271774' => null,
'ENSG00000275958' => 'TUC338',
'ENSG00000231703' => null,
'ENSG00000224530' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 10',
'ENSG00000259723' => null,
'ENSMUSG00000047907' => 'teashirt zinc finger family member 2',
'ENSMUSG00000078912' => 'predicted gene 11011',
'ENSMUSG00000085350' => 'RIKEN cDNA 4930529I22 gene',
'ENSMUSG00000085369' => 'RIKEN cDNA 9430093N23 gene',
'ENSMUSG00000086238' => 'predicted gene 14258',
'ENSMUSG00000086840' => 'predicted gene 14250',
'ENSMUSG00000087074' => 'predicted gene 14249',
'ENSMUSG00000096972' => 'predicted gene, 26883',
'ENSMUSG00000097065' => 'RIKEN cDNA A630075F10 gene',
'ENSDARG00000079201' => 'teashirt zinc finger homeobox 2',
'ENSDARG00000082906' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000182463' => 'TSHZ2',
'ENSG00000199218' => 'RN7SKP184',
'ENSG00000223492' => 'RP11-15M15.1',
'ENSG00000225785' => 'RP4-583K8.1',
'ENSG00000227705' => 'RP11-15M15.2',
'ENSG00000230636' => 'RPL36P1',
'ENSG00000232286' => 'RP11-80K6.2',
'ENSG00000232294' => 'RP4-715N11.2',
'ENSG00000232465' => 'RP5-1022J11.2',
'ENSG00000234821' => 'MRPS33P4',
'ENSG00000234948' => 'LINC01524',
'ENSG00000252629' => 'AL050316.1',
'ENSG00000271774' => 'RP4-678D15.1',
'ENSG00000275958' => 'uc_338',
'ENSG00000231703' => 'RP4-669H2.1',
'ENSG00000224530' => 'PPIAP10',
'ENSG00000259723' => 'RP5-823G15.5',
'ENSMUSG00000047907' => 'Tshz2',
'ENSMUSG00000078912' => 'Gm11011',
'ENSMUSG00000085350' => '4930529I22Rik',
'ENSMUSG00000085369' => '9430093N23Rik',
'ENSMUSG00000086238' => 'Gm14258',
'ENSMUSG00000086840' => 'Gm14250',
'ENSMUSG00000087074' => 'Gm14249',
'ENSMUSG00000096972' => 'Gm26883',
'ENSMUSG00000097065' => 'A630075F10Rik',
'ENSDARG00000079201' => 'TSHZ2',
'ENSDARG00000082906' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 27 => 'Brain',
(int) 38 => 'Breast',
(int) 48 => 'Colon',
(int) 58 => 'Heart',
(int) 63 => 'Kidney',
(int) 72 => 'Liver',
(int) 84 => 'Lung',
(int) 94 => 'Muscle',
(int) 104 => 'Ovary',
(int) 116 => 'Placenta',
(int) 128 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 43,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000329613' => array(
'start' => '53185646',
'end' => '53256560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENST00000371497' => array(
'start' => '52972407',
'end' => '53495330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-001'
),
'ENST00000603338' => array(
'start' => '53185283',
'end' => '53487479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-002'
),
'ENST00000605656' => array(
'start' => '53255979',
'end' => '53491063',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TSHZ2-003'
),
'ENST00000362348' => array(
'start' => '53097652',
'end' => '53097984',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP184-201'
),
'ENST00000432706' => array(
'start' => '53168643',
'end' => '53179550',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.1-001'
),
'ENST00000414598' => array(
'start' => '52451464',
'end' => '52455619',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-583K8.1-001'
),
'ENST00000435057' => array(
'start' => '53196229',
'end' => '53208705',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.2-001'
),
'ENST00000419720' => array(
'start' => '52890162',
'end' => '52890386',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL36P1-001'
),
'ENST00000426963' => array(
'start' => '52858338',
'end' => '52862855',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-80K6.2-001'
),
'ENST00000413070' => array(
'start' => '52674411',
'end' => '52681578',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-002'
),
'ENST00000421642' => array(
'start' => '52671917',
'end' => '52690608',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-005'
),
'ENST00000422666' => array(
'start' => '52685122',
'end' => '52690929',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-001'
),
'ENST00000425279' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-004'
),
'ENST00000437987' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-006'
),
'ENST00000448013' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-003'
),
'ENST00000416237' => array(
'start' => '52487922',
'end' => '52500591',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1022J11.2-001'
),
'ENST00000434892' => array(
'start' => '52511252',
'end' => '52511568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS33P4-001'
),
'ENST00000428009' => array(
'start' => '52620838',
'end' => '52650431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-002'
),
'ENST00000454600' => array(
'start' => '52210645',
'end' => '52646741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-001'
),
'ENST00000516820' => array(
'start' => '53062617',
'end' => '53062701',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL050316.1-201'
),
'ENST00000606932' => array(
'start' => '53255979',
'end' => '53487274',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-678D15.1-001'
),
'ENST00000615470' => array(
'start' => '52482801',
'end' => '52482991',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-214'
),
'ENST00000436286' => array(
'start' => '53397661',
'end' => '53412910',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-669H2.1-001'
),
'ENST00000438675' => array(
'start' => '53421199',
'end' => '53421656',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP10-001'
),
'ENST00000558738' => array(
'start' => '53453058',
'end' => '53504314',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-823G15.5-001'
),
'ENSMUST00000109157' => array(
'start' => '169633676',
'end' => '169888504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-002'
),
'ENSMUST00000109159' => array(
'start' => '169633013',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-001'
),
'ENSMUST00000123300' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-003'
),
'ENSMUST00000140699' => array(
'start' => '169885835',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-004'
),
'ENSMUST00000185239' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-005'
),
'ENSMUST00000109160' => array(
'start' => '169582845',
'end' => '169587745',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm11011-201'
),
'ENSMUST00000131509' => array(
'start' => '169399145',
'end' => '169405450',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930529I22Rik-001'
),
'ENSMUST00000152494' => array(
'start' => '169234991',
'end' => '169237770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9430093N23Rik-001'
),
'ENSMUST00000144607' => array(
'start' => '169106453',
'end' => '169110415',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14258-001'
),
'ENSMUST00000148458' => array(
'start' => '169389081',
'end' => '169395524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14250-001'
),
'ENSMUST00000156239' => array(
'start' => '169480617',
'end' => '169504843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14249-001'
),
'ENSMUST00000180945' => array(
'start' => '169633676',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-201'
),
'ENSMUST00000181446' => array(
'start' => '169633646',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-202'
),
'ENSMUST00000180895' => array(
'start' => '170061240',
'end' => '170070671',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A630075F10Rik-201'
),
'ENSDART00000109493' => array(
'start' => '38446503',
'end' => '38449553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENSDART00000117394' => array(
'start' => '38494221',
'end' => '38494345',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.242-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
'ENSG00000182463' => array(
[maximum depth reached]
),
'ENSG00000199218' => array(
[maximum depth reached]
),
'ENSG00000223492' => array(
[maximum depth reached]
),
'ENSG00000225785' => array(
[maximum depth reached]
),
'ENSG00000227705' => array(
[maximum depth reached]
),
'ENSG00000232286' => array(
[maximum depth reached]
),
'ENSG00000232294' => array(
[maximum depth reached]
),
'ENSG00000232465' => array(
[maximum depth reached]
),
'ENSG00000234821' => array(
[maximum depth reached]
),
'ENSG00000234948' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
),
'ENSG00000275958' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Lung',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Kidney',
(int) 45 => 'Testis',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Testis',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Lung',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Bladder',
(int) 61 => 'Colon',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Placenta'
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
'ENSG00000231703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
'ENSG00000224530' => array(
[maximum depth reached]
),
'ENSG00000259723' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis'
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000085350' => array(
[maximum depth reached]
),
'ENSMUSG00000085369' => array(
[maximum depth reached]
),
'ENSMUSG00000086238' => array(
[maximum depth reached]
),
'ENSMUSG00000086840' => array(
[maximum depth reached]
),
'ENSMUSG00000087074' => array(
[maximum depth reached]
),
'ENSMUSG00000096972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Muscle',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Testis',
(int) 6 => 'Bladder',
(int) 7 => 'Colon',
(int) 8 => 'Liver',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Liver',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Ovary',
(int) 20 => 'Testis',
(int) 21 => 'Breast',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis'
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079201' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000182463' => 'teashirt zinc finger homeobox 2',
'ENSG00000199218' => 'RNA, 7SK small nuclear pseudogene 184',
'ENSG00000223492' => null,
'ENSG00000225785' => null,
'ENSG00000227705' => null,
'ENSG00000230636' => 'ribosomal protein L36 pseudogene 1',
'ENSG00000232286' => null,
'ENSG00000232294' => null,
'ENSG00000232465' => null,
'ENSG00000234821' => 'mitochondrial ribosomal protein S33 pseudogene 4',
'ENSG00000234948' => 'long intergenic non-protein coding RNA 1524',
'ENSG00000252629' => null,
'ENSG00000271774' => null,
'ENSG00000275958' => 'TUC338',
'ENSG00000231703' => null,
'ENSG00000224530' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 10',
'ENSG00000259723' => null,
'ENSMUSG00000047907' => 'teashirt zinc finger family member 2',
'ENSMUSG00000078912' => 'predicted gene 11011',
'ENSMUSG00000085350' => 'RIKEN cDNA 4930529I22 gene',
'ENSMUSG00000085369' => 'RIKEN cDNA 9430093N23 gene',
'ENSMUSG00000086238' => 'predicted gene 14258',
'ENSMUSG00000086840' => 'predicted gene 14250',
'ENSMUSG00000087074' => 'predicted gene 14249',
'ENSMUSG00000096972' => 'predicted gene, 26883',
'ENSMUSG00000097065' => 'RIKEN cDNA A630075F10 gene',
'ENSDARG00000079201' => 'teashirt zinc finger homeobox 2',
'ENSDARG00000082906' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000182463' => 'TSHZ2',
'ENSG00000199218' => 'RN7SKP184',
'ENSG00000223492' => 'RP11-15M15.1',
'ENSG00000225785' => 'RP4-583K8.1',
'ENSG00000227705' => 'RP11-15M15.2',
'ENSG00000230636' => 'RPL36P1',
'ENSG00000232286' => 'RP11-80K6.2',
'ENSG00000232294' => 'RP4-715N11.2',
'ENSG00000232465' => 'RP5-1022J11.2',
'ENSG00000234821' => 'MRPS33P4',
'ENSG00000234948' => 'LINC01524',
'ENSG00000252629' => 'AL050316.1',
'ENSG00000271774' => 'RP4-678D15.1',
'ENSG00000275958' => 'uc_338',
'ENSG00000231703' => 'RP4-669H2.1',
'ENSG00000224530' => 'PPIAP10',
'ENSG00000259723' => 'RP5-823G15.5',
'ENSMUSG00000047907' => 'Tshz2',
'ENSMUSG00000078912' => 'Gm11011',
'ENSMUSG00000085350' => '4930529I22Rik',
'ENSMUSG00000085369' => '9430093N23Rik',
'ENSMUSG00000086238' => 'Gm14258',
'ENSMUSG00000086840' => 'Gm14250',
'ENSMUSG00000087074' => 'Gm14249',
'ENSMUSG00000096972' => 'Gm26883',
'ENSMUSG00000097065' => 'A630075F10Rik',
'ENSDARG00000079201' => 'TSHZ2',
'ENSDARG00000082906' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0001',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '52364212',
'seq_end' => '53392560',
'region_length' => '1028348',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0002',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '53392561',
'seq_end' => '53415325',
'region_length' => '22764',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0003',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '53415325',
'seq_end' => '53489310',
'region_length' => '73985',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0004',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '169095491',
'seq_end' => '170072425',
'region_length' => '976934',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0005',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '38381671',
'seq_end' => '38688051',
'region_length' => '306380',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA847',
'seq_start' => '11432',
'seq_end' => '12024',
'region_length' => '592',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 27 => 'Brain',
(int) 38 => 'Breast',
(int) 48 => 'Colon',
(int) 58 => 'Heart',
(int) 63 => 'Kidney',
(int) 72 => 'Liver',
(int) 84 => 'Lung',
(int) 94 => 'Muscle',
(int) 104 => 'Ovary',
(int) 116 => 'Placenta',
(int) 128 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 43
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000329613' => array(
'start' => '53185646',
'end' => '53256560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENST00000371497' => array(
'start' => '52972407',
'end' => '53495330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-001'
),
'ENST00000603338' => array(
'start' => '53185283',
'end' => '53487479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-002'
),
'ENST00000605656' => array(
'start' => '53255979',
'end' => '53491063',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TSHZ2-003'
),
'ENST00000362348' => array(
'start' => '53097652',
'end' => '53097984',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP184-201'
),
'ENST00000432706' => array(
'start' => '53168643',
'end' => '53179550',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.1-001'
),
'ENST00000414598' => array(
'start' => '52451464',
'end' => '52455619',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-583K8.1-001'
),
'ENST00000435057' => array(
'start' => '53196229',
'end' => '53208705',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.2-001'
),
'ENST00000419720' => array(
'start' => '52890162',
'end' => '52890386',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL36P1-001'
),
'ENST00000426963' => array(
'start' => '52858338',
'end' => '52862855',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-80K6.2-001'
),
'ENST00000413070' => array(
'start' => '52674411',
'end' => '52681578',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-002'
),
'ENST00000421642' => array(
'start' => '52671917',
'end' => '52690608',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-005'
),
'ENST00000422666' => array(
'start' => '52685122',
'end' => '52690929',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-001'
),
'ENST00000425279' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-004'
),
'ENST00000437987' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-006'
),
'ENST00000448013' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-003'
),
'ENST00000416237' => array(
'start' => '52487922',
'end' => '52500591',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1022J11.2-001'
),
'ENST00000434892' => array(
'start' => '52511252',
'end' => '52511568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS33P4-001'
),
'ENST00000428009' => array(
'start' => '52620838',
'end' => '52650431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-002'
),
'ENST00000454600' => array(
'start' => '52210645',
'end' => '52646741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-001'
),
'ENST00000516820' => array(
'start' => '53062617',
'end' => '53062701',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL050316.1-201'
),
'ENST00000606932' => array(
'start' => '53255979',
'end' => '53487274',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-678D15.1-001'
),
'ENST00000615470' => array(
'start' => '52482801',
'end' => '52482991',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-214'
),
'ENST00000436286' => array(
'start' => '53397661',
'end' => '53412910',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-669H2.1-001'
),
'ENST00000438675' => array(
'start' => '53421199',
'end' => '53421656',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP10-001'
),
'ENST00000558738' => array(
'start' => '53453058',
'end' => '53504314',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-823G15.5-001'
),
'ENSMUST00000109157' => array(
'start' => '169633676',
'end' => '169888504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-002'
),
'ENSMUST00000109159' => array(
'start' => '169633013',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-001'
),
'ENSMUST00000123300' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-003'
),
'ENSMUST00000140699' => array(
'start' => '169885835',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-004'
),
'ENSMUST00000185239' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-005'
),
'ENSMUST00000109160' => array(
'start' => '169582845',
'end' => '169587745',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm11011-201'
),
'ENSMUST00000131509' => array(
'start' => '169399145',
'end' => '169405450',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930529I22Rik-001'
),
'ENSMUST00000152494' => array(
'start' => '169234991',
'end' => '169237770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9430093N23Rik-001'
),
'ENSMUST00000144607' => array(
'start' => '169106453',
'end' => '169110415',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14258-001'
),
'ENSMUST00000148458' => array(
'start' => '169389081',
'end' => '169395524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14250-001'
),
'ENSMUST00000156239' => array(
'start' => '169480617',
'end' => '169504843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14249-001'
),
'ENSMUST00000180945' => array(
'start' => '169633676',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-201'
),
'ENSMUST00000181446' => array(
'start' => '169633646',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-202'
),
'ENSMUST00000180895' => array(
'start' => '170061240',
'end' => '170070671',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A630075F10Rik-201'
),
'ENSDART00000109493' => array(
'start' => '38446503',
'end' => '38449553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENSDART00000117394' => array(
'start' => '38494221',
'end' => '38494345',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.242-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
'ENSG00000182463' => array(
[maximum depth reached]
),
'ENSG00000199218' => array(
[maximum depth reached]
),
'ENSG00000223492' => array(
[maximum depth reached]
),
'ENSG00000225785' => array(
[maximum depth reached]
),
'ENSG00000227705' => array(
[maximum depth reached]
),
'ENSG00000232286' => array(
[maximum depth reached]
),
'ENSG00000232294' => array(
[maximum depth reached]
),
'ENSG00000232465' => array(
[maximum depth reached]
),
'ENSG00000234821' => array(
[maximum depth reached]
),
'ENSG00000234948' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
),
'ENSG00000275958' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Lung',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Kidney',
(int) 45 => 'Testis',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Testis',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Lung',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Bladder',
(int) 61 => 'Colon',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Placenta'
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
'ENSG00000231703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
'ENSG00000224530' => array(
[maximum depth reached]
),
'ENSG00000259723' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis'
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000085350' => array(
[maximum depth reached]
),
'ENSMUSG00000085369' => array(
[maximum depth reached]
),
'ENSMUSG00000086238' => array(
[maximum depth reached]
),
'ENSMUSG00000086840' => array(
[maximum depth reached]
),
'ENSMUSG00000087074' => array(
[maximum depth reached]
),
'ENSMUSG00000096972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Muscle',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Testis',
(int) 6 => 'Bladder',
(int) 7 => 'Colon',
(int) 8 => 'Liver',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Liver',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Ovary',
(int) 20 => 'Testis',
(int) 21 => 'Breast',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis'
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079201' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA847',
'seq_start' => '11432',
'seq_end' => '12024',
'region_length' => '592',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
)
$gene_el = array(
'ENSDART00000109493' => array(
'Brain' => array(
'average_FPKM' => '5.959',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '1.077',
'stddev_FPKM' => '0.29'
),
'Kidney' => array(
'average_FPKM' => '1.447',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.682',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000079201'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '5.959',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '1.077',
'stddev_FPKM' => '0.29'
),
'Kidney' => array(
'average_FPKM' => '1.447',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.682',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000109493'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182463' => 'teashirt zinc finger homeobox 2',
'ENSG00000199218' => 'RNA, 7SK small nuclear pseudogene 184',
'ENSG00000223492' => null,
'ENSG00000225785' => null,
'ENSG00000227705' => null,
'ENSG00000230636' => 'ribosomal protein L36 pseudogene 1',
'ENSG00000232286' => null,
'ENSG00000232294' => null,
'ENSG00000232465' => null,
'ENSG00000234821' => 'mitochondrial ribosomal protein S33 pseudogene 4',
'ENSG00000234948' => 'long intergenic non-protein coding RNA 1524',
'ENSG00000252629' => null,
'ENSG00000271774' => null,
'ENSG00000275958' => 'TUC338',
'ENSG00000231703' => null,
'ENSG00000224530' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 10',
'ENSG00000259723' => null,
'ENSMUSG00000047907' => 'teashirt zinc finger family member 2',
'ENSMUSG00000078912' => 'predicted gene 11011',
'ENSMUSG00000085350' => 'RIKEN cDNA 4930529I22 gene',
'ENSMUSG00000085369' => 'RIKEN cDNA 9430093N23 gene',
'ENSMUSG00000086238' => 'predicted gene 14258',
'ENSMUSG00000086840' => 'predicted gene 14250',
'ENSMUSG00000087074' => 'predicted gene 14249',
'ENSMUSG00000096972' => 'predicted gene, 26883',
'ENSMUSG00000097065' => 'RIKEN cDNA A630075F10 gene',
'ENSDARG00000079201' => 'teashirt zinc finger homeobox 2',
'ENSDARG00000082906' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000182463' => 'TSHZ2',
'ENSG00000199218' => 'RN7SKP184',
'ENSG00000223492' => 'RP11-15M15.1',
'ENSG00000225785' => 'RP4-583K8.1',
'ENSG00000227705' => 'RP11-15M15.2',
'ENSG00000230636' => 'RPL36P1',
'ENSG00000232286' => 'RP11-80K6.2',
'ENSG00000232294' => 'RP4-715N11.2',
'ENSG00000232465' => 'RP5-1022J11.2',
'ENSG00000234821' => 'MRPS33P4',
'ENSG00000234948' => 'LINC01524',
'ENSG00000252629' => 'AL050316.1',
'ENSG00000271774' => 'RP4-678D15.1',
'ENSG00000275958' => 'uc_338',
'ENSG00000231703' => 'RP4-669H2.1',
'ENSG00000224530' => 'PPIAP10',
'ENSG00000259723' => 'RP5-823G15.5',
'ENSMUSG00000047907' => 'Tshz2',
'ENSMUSG00000078912' => 'Gm11011',
'ENSMUSG00000085350' => '4930529I22Rik',
'ENSMUSG00000085369' => '9430093N23Rik',
'ENSMUSG00000086238' => 'Gm14258',
'ENSMUSG00000086840' => 'Gm14250',
'ENSMUSG00000087074' => 'Gm14249',
'ENSMUSG00000096972' => 'Gm26883',
'ENSMUSG00000097065' => 'A630075F10Rik',
'ENSDARG00000079201' => 'TSHZ2',
'ENSDARG00000082906' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 27 => 'Brain',
(int) 38 => 'Breast',
(int) 48 => 'Colon',
(int) 58 => 'Heart',
(int) 63 => 'Kidney',
(int) 72 => 'Liver',
(int) 84 => 'Lung',
(int) 94 => 'Muscle',
(int) 104 => 'Ovary',
(int) 116 => 'Placenta',
(int) 128 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 43,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000329613' => array(
'start' => '53185646',
'end' => '53256560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENST00000371497' => array(
'start' => '52972407',
'end' => '53495330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-001'
),
'ENST00000603338' => array(
'start' => '53185283',
'end' => '53487479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-002'
),
'ENST00000605656' => array(
'start' => '53255979',
'end' => '53491063',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TSHZ2-003'
),
'ENST00000362348' => array(
'start' => '53097652',
'end' => '53097984',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP184-201'
),
'ENST00000432706' => array(
'start' => '53168643',
'end' => '53179550',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.1-001'
),
'ENST00000414598' => array(
'start' => '52451464',
'end' => '52455619',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-583K8.1-001'
),
'ENST00000435057' => array(
'start' => '53196229',
'end' => '53208705',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.2-001'
),
'ENST00000419720' => array(
'start' => '52890162',
'end' => '52890386',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL36P1-001'
),
'ENST00000426963' => array(
'start' => '52858338',
'end' => '52862855',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-80K6.2-001'
),
'ENST00000413070' => array(
'start' => '52674411',
'end' => '52681578',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-002'
),
'ENST00000421642' => array(
'start' => '52671917',
'end' => '52690608',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-005'
),
'ENST00000422666' => array(
'start' => '52685122',
'end' => '52690929',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-001'
),
'ENST00000425279' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-004'
),
'ENST00000437987' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-006'
),
'ENST00000448013' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-003'
),
'ENST00000416237' => array(
'start' => '52487922',
'end' => '52500591',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1022J11.2-001'
),
'ENST00000434892' => array(
'start' => '52511252',
'end' => '52511568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS33P4-001'
),
'ENST00000428009' => array(
'start' => '52620838',
'end' => '52650431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-002'
),
'ENST00000454600' => array(
'start' => '52210645',
'end' => '52646741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-001'
),
'ENST00000516820' => array(
'start' => '53062617',
'end' => '53062701',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL050316.1-201'
),
'ENST00000606932' => array(
'start' => '53255979',
'end' => '53487274',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-678D15.1-001'
),
'ENST00000615470' => array(
'start' => '52482801',
'end' => '52482991',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-214'
),
'ENST00000436286' => array(
'start' => '53397661',
'end' => '53412910',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-669H2.1-001'
),
'ENST00000438675' => array(
'start' => '53421199',
'end' => '53421656',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP10-001'
),
'ENST00000558738' => array(
'start' => '53453058',
'end' => '53504314',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-823G15.5-001'
),
'ENSMUST00000109157' => array(
'start' => '169633676',
'end' => '169888504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-002'
),
'ENSMUST00000109159' => array(
'start' => '169633013',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-001'
),
'ENSMUST00000123300' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-003'
),
'ENSMUST00000140699' => array(
'start' => '169885835',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-004'
),
'ENSMUST00000185239' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-005'
),
'ENSMUST00000109160' => array(
'start' => '169582845',
'end' => '169587745',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm11011-201'
),
'ENSMUST00000131509' => array(
'start' => '169399145',
'end' => '169405450',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930529I22Rik-001'
),
'ENSMUST00000152494' => array(
'start' => '169234991',
'end' => '169237770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9430093N23Rik-001'
),
'ENSMUST00000144607' => array(
'start' => '169106453',
'end' => '169110415',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14258-001'
),
'ENSMUST00000148458' => array(
'start' => '169389081',
'end' => '169395524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14250-001'
),
'ENSMUST00000156239' => array(
'start' => '169480617',
'end' => '169504843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14249-001'
),
'ENSMUST00000180945' => array(
'start' => '169633676',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-201'
),
'ENSMUST00000181446' => array(
'start' => '169633646',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-202'
),
'ENSMUST00000180895' => array(
'start' => '170061240',
'end' => '170070671',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A630075F10Rik-201'
),
'ENSDART00000109493' => array(
'start' => '38446503',
'end' => '38449553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENSDART00000117394' => array(
'start' => '38494221',
'end' => '38494345',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.242-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
'ENSG00000182463' => array(
[maximum depth reached]
),
'ENSG00000199218' => array(
[maximum depth reached]
),
'ENSG00000223492' => array(
[maximum depth reached]
),
'ENSG00000225785' => array(
[maximum depth reached]
),
'ENSG00000227705' => array(
[maximum depth reached]
),
'ENSG00000232286' => array(
[maximum depth reached]
),
'ENSG00000232294' => array(
[maximum depth reached]
),
'ENSG00000232465' => array(
[maximum depth reached]
),
'ENSG00000234821' => array(
[maximum depth reached]
),
'ENSG00000234948' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
),
'ENSG00000275958' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Lung',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Kidney',
(int) 45 => 'Testis',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Testis',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Lung',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Bladder',
(int) 61 => 'Colon',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Placenta'
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
'ENSG00000231703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
'ENSG00000224530' => array(
[maximum depth reached]
),
'ENSG00000259723' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis'
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000085350' => array(
[maximum depth reached]
),
'ENSMUSG00000085369' => array(
[maximum depth reached]
),
'ENSMUSG00000086238' => array(
[maximum depth reached]
),
'ENSMUSG00000086840' => array(
[maximum depth reached]
),
'ENSMUSG00000087074' => array(
[maximum depth reached]
),
'ENSMUSG00000096972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Muscle',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Testis',
(int) 6 => 'Bladder',
(int) 7 => 'Colon',
(int) 8 => 'Liver',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Liver',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Ovary',
(int) 20 => 'Testis',
(int) 21 => 'Breast',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis'
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079201' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000182463' => 'teashirt zinc finger homeobox 2',
'ENSG00000199218' => 'RNA, 7SK small nuclear pseudogene 184',
'ENSG00000223492' => null,
'ENSG00000225785' => null,
'ENSG00000227705' => null,
'ENSG00000230636' => 'ribosomal protein L36 pseudogene 1',
'ENSG00000232286' => null,
'ENSG00000232294' => null,
'ENSG00000232465' => null,
'ENSG00000234821' => 'mitochondrial ribosomal protein S33 pseudogene 4',
'ENSG00000234948' => 'long intergenic non-protein coding RNA 1524',
'ENSG00000252629' => null,
'ENSG00000271774' => null,
'ENSG00000275958' => 'TUC338',
'ENSG00000231703' => null,
'ENSG00000224530' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 10',
'ENSG00000259723' => null,
'ENSMUSG00000047907' => 'teashirt zinc finger family member 2',
'ENSMUSG00000078912' => 'predicted gene 11011',
'ENSMUSG00000085350' => 'RIKEN cDNA 4930529I22 gene',
'ENSMUSG00000085369' => 'RIKEN cDNA 9430093N23 gene',
'ENSMUSG00000086238' => 'predicted gene 14258',
'ENSMUSG00000086840' => 'predicted gene 14250',
'ENSMUSG00000087074' => 'predicted gene 14249',
'ENSMUSG00000096972' => 'predicted gene, 26883',
'ENSMUSG00000097065' => 'RIKEN cDNA A630075F10 gene',
'ENSDARG00000079201' => 'teashirt zinc finger homeobox 2',
'ENSDARG00000082906' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000182463' => 'TSHZ2',
'ENSG00000199218' => 'RN7SKP184',
'ENSG00000223492' => 'RP11-15M15.1',
'ENSG00000225785' => 'RP4-583K8.1',
'ENSG00000227705' => 'RP11-15M15.2',
'ENSG00000230636' => 'RPL36P1',
'ENSG00000232286' => 'RP11-80K6.2',
'ENSG00000232294' => 'RP4-715N11.2',
'ENSG00000232465' => 'RP5-1022J11.2',
'ENSG00000234821' => 'MRPS33P4',
'ENSG00000234948' => 'LINC01524',
'ENSG00000252629' => 'AL050316.1',
'ENSG00000271774' => 'RP4-678D15.1',
'ENSG00000275958' => 'uc_338',
'ENSG00000231703' => 'RP4-669H2.1',
'ENSG00000224530' => 'PPIAP10',
'ENSG00000259723' => 'RP5-823G15.5',
'ENSMUSG00000047907' => 'Tshz2',
'ENSMUSG00000078912' => 'Gm11011',
'ENSMUSG00000085350' => '4930529I22Rik',
'ENSMUSG00000085369' => '9430093N23Rik',
'ENSMUSG00000086238' => 'Gm14258',
'ENSMUSG00000086840' => 'Gm14250',
'ENSMUSG00000087074' => 'Gm14249',
'ENSMUSG00000096972' => 'Gm26883',
'ENSMUSG00000097065' => 'A630075F10Rik',
'ENSDARG00000079201' => 'TSHZ2',
'ENSDARG00000082906' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0001',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '52364212',
'seq_end' => '53392560',
'region_length' => '1028348',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0002',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '53392561',
'seq_end' => '53415325',
'region_length' => '22764',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0003',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '53415325',
'seq_end' => '53489310',
'region_length' => '73985',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0004',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '169095491',
'seq_end' => '170072425',
'region_length' => '976934',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0005',
'tax_id' => '7955',
'chromosome' => '23',
'seq_start' => '38381671',
'seq_end' => '38688051',
'region_length' => '306380',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA847',
'seq_start' => '11432',
'seq_end' => '12024',
'region_length' => '592',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 27 => 'Brain',
(int) 38 => 'Breast',
(int) 48 => 'Colon',
(int) 58 => 'Heart',
(int) 63 => 'Kidney',
(int) 72 => 'Liver',
(int) 84 => 'Lung',
(int) 94 => 'Muscle',
(int) 104 => 'Ovary',
(int) 116 => 'Placenta',
(int) 128 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 43
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000329613' => array(
'start' => '53185646',
'end' => '53256560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENST00000371497' => array(
'start' => '52972407',
'end' => '53495330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-001'
),
'ENST00000603338' => array(
'start' => '53185283',
'end' => '53487479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-002'
),
'ENST00000605656' => array(
'start' => '53255979',
'end' => '53491063',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TSHZ2-003'
),
'ENST00000362348' => array(
'start' => '53097652',
'end' => '53097984',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP184-201'
),
'ENST00000432706' => array(
'start' => '53168643',
'end' => '53179550',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.1-001'
),
'ENST00000414598' => array(
'start' => '52451464',
'end' => '52455619',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-583K8.1-001'
),
'ENST00000435057' => array(
'start' => '53196229',
'end' => '53208705',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-15M15.2-001'
),
'ENST00000419720' => array(
'start' => '52890162',
'end' => '52890386',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL36P1-001'
),
'ENST00000426963' => array(
'start' => '52858338',
'end' => '52862855',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-80K6.2-001'
),
'ENST00000413070' => array(
'start' => '52674411',
'end' => '52681578',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-002'
),
'ENST00000421642' => array(
'start' => '52671917',
'end' => '52690608',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-005'
),
'ENST00000422666' => array(
'start' => '52685122',
'end' => '52690929',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-001'
),
'ENST00000425279' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-004'
),
'ENST00000437987' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-006'
),
'ENST00000448013' => array(
'start' => '52681428',
'end' => '52690580',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-715N11.2-003'
),
'ENST00000416237' => array(
'start' => '52487922',
'end' => '52500591',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1022J11.2-001'
),
'ENST00000434892' => array(
'start' => '52511252',
'end' => '52511568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS33P4-001'
),
'ENST00000428009' => array(
'start' => '52620838',
'end' => '52650431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-002'
),
'ENST00000454600' => array(
'start' => '52210645',
'end' => '52646741',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01524-001'
),
'ENST00000516820' => array(
'start' => '53062617',
'end' => '53062701',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL050316.1-201'
),
'ENST00000606932' => array(
'start' => '53255979',
'end' => '53487274',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-678D15.1-001'
),
'ENST00000615470' => array(
'start' => '52482801',
'end' => '52482991',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-214'
),
'ENST00000436286' => array(
'start' => '53397661',
'end' => '53412910',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-669H2.1-001'
),
'ENST00000438675' => array(
'start' => '53421199',
'end' => '53421656',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP10-001'
),
'ENST00000558738' => array(
'start' => '53453058',
'end' => '53504314',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-823G15.5-001'
),
'ENSMUST00000109157' => array(
'start' => '169633676',
'end' => '169888504',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-002'
),
'ENSMUST00000109159' => array(
'start' => '169633013',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-001'
),
'ENSMUST00000123300' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-003'
),
'ENSMUST00000140699' => array(
'start' => '169885835',
'end' => '169913093',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-004'
),
'ENSMUST00000185239' => array(
'start' => '169884893',
'end' => '170071816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz2-005'
),
'ENSMUST00000109160' => array(
'start' => '169582845',
'end' => '169587745',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm11011-201'
),
'ENSMUST00000131509' => array(
'start' => '169399145',
'end' => '169405450',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930529I22Rik-001'
),
'ENSMUST00000152494' => array(
'start' => '169234991',
'end' => '169237770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9430093N23Rik-001'
),
'ENSMUST00000144607' => array(
'start' => '169106453',
'end' => '169110415',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14258-001'
),
'ENSMUST00000148458' => array(
'start' => '169389081',
'end' => '169395524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14250-001'
),
'ENSMUST00000156239' => array(
'start' => '169480617',
'end' => '169504843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14249-001'
),
'ENSMUST00000180945' => array(
'start' => '169633676',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-201'
),
'ENSMUST00000181446' => array(
'start' => '169633646',
'end' => '169888503',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26883-202'
),
'ENSMUST00000180895' => array(
'start' => '170061240',
'end' => '170070671',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A630075F10Rik-201'
),
'ENSDART00000109493' => array(
'start' => '38446503',
'end' => '38449553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ2-201'
),
'ENSDART00000117394' => array(
'start' => '38494221',
'end' => '38494345',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.242-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007L0_0001' => array(
'genes_in_region' => array(
'ENSG00000182463' => array(
[maximum depth reached]
),
'ENSG00000199218' => array(
[maximum depth reached]
),
'ENSG00000223492' => array(
[maximum depth reached]
),
'ENSG00000225785' => array(
[maximum depth reached]
),
'ENSG00000227705' => array(
[maximum depth reached]
),
'ENSG00000232286' => array(
[maximum depth reached]
),
'ENSG00000232294' => array(
[maximum depth reached]
),
'ENSG00000232465' => array(
[maximum depth reached]
),
'ENSG00000234821' => array(
[maximum depth reached]
),
'ENSG00000234948' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
),
'ENSG00000275958' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 7 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Lung',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Kidney',
(int) 45 => 'Testis',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Testis',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Lung',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Bladder',
(int) 61 => 'Colon',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Placenta'
)
),
'CIL_0007L0_0002' => array(
'genes_in_region' => array(
'ENSG00000231703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007L0_0003' => array(
'genes_in_region' => array(
'ENSG00000224530' => array(
[maximum depth reached]
),
'ENSG00000259723' => array(
[maximum depth reached]
),
'ENSG00000271774' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis'
)
),
'CIL_0007L0_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000085350' => array(
[maximum depth reached]
),
'ENSMUSG00000085369' => array(
[maximum depth reached]
),
'ENSMUSG00000086238' => array(
[maximum depth reached]
),
'ENSMUSG00000086840' => array(
[maximum depth reached]
),
'ENSMUSG00000087074' => array(
[maximum depth reached]
),
'ENSMUSG00000096972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Muscle',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Testis',
(int) 6 => 'Bladder',
(int) 7 => 'Colon',
(int) 8 => 'Liver',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Liver',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Ovary',
(int) 20 => 'Testis',
(int) 21 => 'Breast',
(int) 22 => 'Muscle',
(int) 23 => 'Placenta',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis'
)
),
'CIL_0007L0_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079201' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007L0_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA847',
'seq_start' => '11432',
'seq_end' => '12024',
'region_length' => '592',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ2'
)
)
$gene_el = array(
'ENSDART00000109493' => array(
'Brain' => array(
'average_FPKM' => '5.959',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '1.077',
'stddev_FPKM' => '0.29'
),
'Kidney' => array(
'average_FPKM' => '1.447',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.682',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000079201'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '5.959',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '1.077',
'stddev_FPKM' => '0.29'
),
'Kidney' => array(
'average_FPKM' => '1.447',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.682',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000109493'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(TSHZ2)