C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3B (H3.3B) pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440551 H3F3BP1-001 ENSG00000236534 9606 + 13:71675067-71675469 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLungMusclePlacentaTestisENST00000440551
Transcript ID Adipose Brain Breast Heart Kidney Lung Muscle Placenta Testis
ENST00000440551 0.195±0.00 0.153±0.00 0.053±0.00 0.105±0.00 0.106±0.00 0.098±0.00 0.088±0.00 0.172±0.00 0.218±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VF CIL_0003VF_0001 CGP 13:69700594-71867192
CIL_0007L7 CIL_0007L7_0001 UCNEbase 13:70667313-71866528
CIL_0009B5 CIL_0009B5_0001 VISTA 13:71189244-71789684
CIL_0008M4 CIL_0008M4_0001 VISTA 13:71381704-71982907
CIL_0008M8 CIL_0008M8_0001 VISTA 13:71381958-71982706
CIL_000958 CIL_000958_0001 VISTA 13:71426717-72028802
CIL_0004PD CIL_0004PD_0002 CGP 13:71437966-72727687
CIL_0008ZX CIL_0008ZX_0001 VISTA 13:71459384-72060856
CIL_0008LW CIL_0008LW_0001 VISTA 13:71471848-72074098
CIL_000951 CIL_000951_0001 VISTA 13:71551655-72154203

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 623
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 623
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 612
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 606
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 603
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 544
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 534
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 534
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 473
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 418
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 257
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 250
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 1.4013e-45 185

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