C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509149 CTC-470C15.1-001 ENSG00000250705 9606 + 5:88602780-88603117 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartENST00000509149
Transcript ID Adipose Adrenal Brain Breast Colon Heart
ENST00000509149 0.111±0.00 0.057±0.00 0.063±0.00 0.058±0.00 0.677±0.52 0.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S7 CIL_0008S7_0001 VISTA 5:88096337-88697448
CIL_0005KE CIL_0005KE_0002 CGP 5:88189633-88904105
CIL_0007M9 CIL_0007M9_0001 UCNEbase 5:88540043-88678047
CIL_0008B9 CIL_0008B9_0001 VISTA 5:88583640-89184171

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 285
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 285
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 279
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 279
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 268
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 265
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 252
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 241
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 235
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 3e-29 132

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