Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
EBF2	UCNEbase	9606	8:25894448-26370810
Gene	Transcript	Position	Biotype
ENSG00000221818 (EBF2) early B-cell factor 2	ENST00000408929 (EBF2-002)	25844362-26041488	protein_coding
ENST00000517825 (EBF2-003)	26031450-26045178	retained_intron
ENST00000520164 (EBF2-001)	25841730-26045397	protein_coding
ENST00000535548 (EBF2-201)	25844609-25887916	protein_coding
ENSG00000221914 (PPP2R2A) protein phosphatase 2, regulatory subunit B, alpha	ENST00000315985 (PPP2R2A-002)	26293216-26370886	protein_coding
ENST00000380737 (PPP2R2A-001)	26291491-26372680	protein_coding
ENST00000517754 (PPP2R2A-003)	26361090-26371129	retained_intron
ENST00000518208 (PPP2R2A-024)	26365098-26370314	retained_intron
ENST00000518215 (PPP2R2A-020)	26354419-26370363	retained_intron
ENST00000518254 (PPP2R2A-017)	26291528-26354630	nonsense_mediated_decay
ENST00000518397 (PPP2R2A-021)	26291614-26361012	nonsense_mediated_decay
ENST00000518890 (PPP2R2A-023)	26360600-26370391	retained_intron
ENST00000519439 (PPP2R2A-018)	26293572-26361085	retained_intron
ENST00000519636 (PPP2R2A-015)	26293216-26360182	processed_transcript
ENST00000520329 (PPP2R2A-010)	26291528-26360281	nonsense_mediated_decay
ENST00000520438 (PPP2R2A-022)	26339919-26360235	processed_transcript
ENST00000521095 (PPP2R2A-009)	26292119-26354550	processed_transcript
ENST00000521484 (PPP2R2A-019)	26293590-26360238	retained_intron
ENST00000521557 (PPP2R2A-016)	26293483-26361033	protein_coding
ENST00000522150 (PPP2R2A-007)	26292113-26339973	processed_transcript
ENST00000522482 (PPP2R2A-014)	26293217-26354637	processed_transcript
ENST00000522535 (PPP2R2A-006)	26291835-26361001	protein_coding
ENST00000523473 (PPP2R2A-008)	26292117-26339973	processed_transcript
ENST00000523925 (PPP2R2A-012)	26293112-26361007	protein_coding
ENST00000523964 (PPP2R2A-011)	26298575-26361044	processed_transcript
ENST00000524099 (PPP2R2A-013)	26293206-26360237	processed_transcript
ENST00000524169 (PPP2R2A-004)	26291539-26370324	protein_coding

Source ID	Type	Tax ID	Position
EBF2	UCNEbase	10090	14:67015990-67383923
Gene	Transcript	Position	Biotype
ENSMUSG00000022052 (Ppp2r2a) protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230 (Ppp2r2a-201)	67014057-67072471	protein_coding
ENSMUSG00000022053 (Ebf2) early B cell factor 2	ENSMUST00000022637 (Ebf2-001)	67233292-67429777	protein_coding
ENSMUST00000176029 (Ebf2-004)	67234644-67428687	protein_coding
ENSMUST00000176161 (Ebf2-003)	67233586-67430918	protein_coding
ENSMUST00000177231 (Ebf2-002)	67233603-67236513	retained_intron
ENSMUSG00000075549 (Gm6878) predicted gene 6878	ENSMUST00000100448 (Gm6878-001)	67304888-67314711	protein_coding
ENSMUSG00000093386 (1700120O09Rik) RIKEN cDNA 1700120O09 gene	ENSMUST00000177127 (1700120O09Rik-001)	67324894-67335928	processed_transcript
ENSMUSG00000093472 (4930438E09Rik) RIKEN cDNA 4930438E09 gene	ENSMUST00000176841 (4930438E09Rik-001)	67332042-67397742	processed_transcript
ENSMUSG00000093744 (Gm20675) predicted gene 20675	ENSMUST00000175861 (Gm20675-001)	67232437-67233129	processed_transcript

Notice (8): Undefined index: CIL_0007MZ_0003 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007MZ_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MZ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000199620' => 'RNA, 5S ribosomal pseudogene 258',
		'ENSG00000221818' => 'early B-cell factor 2',
		'ENSG00000221914' => 'protein phosphatase 2, regulatory subunit B, alpha',
		'ENSG00000249213' => null,
		'ENSMUSG00000022052' => 'protein phosphatase 2, regulatory subunit B, alpha',
		'ENSMUSG00000022053' => 'early B cell factor 2',
		'ENSMUSG00000075549' => 'predicted gene 6878',
		'ENSMUSG00000080432' => 'predicted gene, 23178',
		'ENSMUSG00000093386' => 'RIKEN cDNA 1700120O09 gene',
		'ENSMUSG00000093472' => 'RIKEN cDNA 4930438E09 gene',
		'ENSMUSG00000093744' => 'predicted gene 20675',
		'ENSMUSG00000098365' => 'predicted gene, 27647'
	),
	'gene_name_arr' => array(
		'ENSG00000199620' => 'RNA5SP258',
		'ENSG00000221818' => 'EBF2',
		'ENSG00000221914' => 'PPP2R2A',
		'ENSG00000249213' => 'RP11-98P2.1',
		'ENSMUSG00000022052' => 'Ppp2r2a',
		'ENSMUSG00000022053' => 'Ebf2',
		'ENSMUSG00000075549' => 'Gm6878',
		'ENSMUSG00000080432' => 'Gm23178',
		'ENSMUSG00000093386' => '1700120O09Rik',
		'ENSMUSG00000093472' => '4930438E09Rik',
		'ENSMUSG00000093744' => 'Gm20675',
		'ENSMUSG00000098365' => 'Gm27647'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 9 => 'Adrenal',
		(int) 20 => 'Bladder',
		(int) 28 => 'Brain',
		(int) 39 => 'Breast',
		(int) 53 => 'Colon',
		(int) 62 => 'Heart',
		(int) 71 => 'Kidney',
		(int) 80 => 'Liver',
		(int) 89 => 'Lung',
		(int) 101 => 'Muscle',
		(int) 109 => 'Ovary',
		(int) 124 => 'Placenta',
		(int) 138 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 40,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000362750' => array(
			'start' => '26136880',
			'end' => '26136998',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP258-201'
		),
		'ENST00000408929' => array(
			'start' => '25844362',
			'end' => '26041488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-002'
		),
		'ENST00000517825' => array(
			'start' => '26031450',
			'end' => '26045178',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'EBF2-003'
		),
		'ENST00000520164' => array(
			'start' => '25841730',
			'end' => '26045397',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-001'
		),
		'ENST00000535548' => array(
			'start' => '25844609',
			'end' => '25887916',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-201'
		),
		'ENST00000315985' => array(
			'start' => '26293216',
			'end' => '26370886',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-002'
		),
		'ENST00000380737' => array(
			'start' => '26291491',
			'end' => '26372680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-001'
		),
		'ENST00000517754' => array(
			'start' => '26361090',
			'end' => '26371129',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-003'
		),
		'ENST00000518208' => array(
			'start' => '26365098',
			'end' => '26370314',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-024'
		),
		'ENST00000518215' => array(
			'start' => '26354419',
			'end' => '26370363',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-020'
		),
		'ENST00000518254' => array(
			'start' => '26291528',
			'end' => '26354630',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-017'
		),
		'ENST00000518397' => array(
			'start' => '26291614',
			'end' => '26361012',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-021'
		),
		'ENST00000518890' => array(
			'start' => '26360600',
			'end' => '26370391',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-023'
		),
		'ENST00000519439' => array(
			'start' => '26293572',
			'end' => '26361085',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-018'
		),
		'ENST00000519636' => array(
			'start' => '26293216',
			'end' => '26360182',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-015'
		),
		'ENST00000520329' => array(
			'start' => '26291528',
			'end' => '26360281',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-010'
		),
		'ENST00000520438' => array(
			'start' => '26339919',
			'end' => '26360235',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-022'
		),
		'ENST00000521095' => array(
			'start' => '26292119',
			'end' => '26354550',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-009'
		),
		'ENST00000521484' => array(
			'start' => '26293590',
			'end' => '26360238',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-019'
		),
		'ENST00000521557' => array(
			'start' => '26293483',
			'end' => '26361033',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-016'
		),
		'ENST00000522150' => array(
			'start' => '26292113',
			'end' => '26339973',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-007'
		),
		'ENST00000522482' => array(
			'start' => '26293217',
			'end' => '26354637',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-014'
		),
		'ENST00000522535' => array(
			'start' => '26291835',
			'end' => '26361001',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-006'
		),
		'ENST00000523473' => array(
			'start' => '26292117',
			'end' => '26339973',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-008'
		),
		'ENST00000523925' => array(
			'start' => '26293112',
			'end' => '26361007',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-012'
		),
		'ENST00000523964' => array(
			'start' => '26298575',
			'end' => '26361044',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-011'
		),
		'ENST00000524099' => array(
			'start' => '26293206',
			'end' => '26360237',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-013'
		),
		'ENST00000524169' => array(
			'start' => '26291539',
			'end' => '26370324',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-004'
		),
		'ENST00000512187' => array(
			'start' => '26254883',
			'end' => '26256628',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-98P2.1-001'
		),
		'ENSMUST00000089230' => array(
			'start' => '67014057',
			'end' => '67072471',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ppp2r2a-201'
		),
		'ENSMUST00000022637' => array(
			'start' => '67233292',
			'end' => '67429777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-001'
		),
		'ENSMUST00000176029' => array(
			'start' => '67234644',
			'end' => '67428687',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-004'
		),
		'ENSMUST00000176161' => array(
			'start' => '67233586',
			'end' => '67430918',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-003'
		),
		'ENSMUST00000177231' => array(
			'start' => '67233603',
			'end' => '67236513',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ebf2-002'
		),
		'ENSMUST00000100448' => array(
			'start' => '67304888',
			'end' => '67314711',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm6878-001'
		),
		'ENSMUST00000116782' => array(
			'start' => '67274869',
			'end' => '67274963',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm23178-201'
		),
		'ENSMUST00000177127' => array(
			'start' => '67324894',
			'end' => '67335928',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => '1700120O09Rik-001'
		),
		'ENSMUST00000176841' => array(
			'start' => '67332042',
			'end' => '67397742',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => '4930438E09Rik-001'
		),
		'ENSMUST00000175861' => array(
			'start' => '67232437',
			'end' => '67233129',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Gm20675-001'
		),
		'ENSMUST00000184709' => array(
			'start' => '67074830',
			'end' => '67074947',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27647-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007MZ_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MZ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007MZ_0001' => array(
		'genes_in_region' => array(
			'ENSG00000221818' => array(
				[maximum depth reached]
			),
			'ENSG00000221914' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Liver',
			(int) 7 => 'Lung',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Lung',
			(int) 27 => 'Muscle',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Testis',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Brain',
			(int) 45 => 'Breast',
			(int) 46 => 'Colon',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adrenal',
			(int) 56 => 'Bladder',
			(int) 57 => 'Breast',
			(int) 58 => 'Kidney',
			(int) 59 => 'Lung',
			(int) 60 => 'Muscle',
			(int) 61 => 'Ovary',
			(int) 62 => 'Kidney',
			(int) 63 => 'Brain',
			(int) 64 => 'Breast',
			(int) 65 => 'Heart',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Ovary',
			(int) 69 => 'Colon',
			(int) 70 => 'Ovary',
			(int) 71 => 'Placenta',
			(int) 72 => 'Testis',
			(int) 73 => 'Bladder',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	),
	'CIL_0007MZ_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000022052' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000022053' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000075549' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093386' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093472' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093744' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Breast',
			(int) 22 => 'Colon',
			(int) 23 => 'Heart',
			(int) 24 => 'Kidney',
			(int) 25 => 'Lung',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Brain',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Liver',
			(int) 35 => 'Lung',
			(int) 36 => 'Muscle',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Ovary',
			(int) 41 => 'Adipose',
			(int) 42 => 'Adrenal',
			(int) 43 => 'Bladder',
			(int) 44 => 'Breast',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Ovary',
			(int) 49 => 'Placenta',
			(int) 50 => 'Testis',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Bladder',
			(int) 54 => 'Brain',
			(int) 55 => 'Breast',
			(int) 56 => 'Heart',
			(int) 57 => 'Liver',
			(int) 58 => 'Lung',
			(int) 59 => 'Placenta',
			(int) 60 => 'Testis',
			(int) 61 => 'Adipose',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Placenta',
			(int) 65 => 'Testis',
			(int) 66 => 'Adipose',
			(int) 67 => 'Adrenal',
			(int) 68 => 'Brain',
			(int) 69 => 'Breast',
			(int) 70 => 'Muscle',
			(int) 71 => 'Placenta'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000199620' => 'RNA, 5S ribosomal pseudogene 258',
	'ENSG00000221818' => 'early B-cell factor 2',
	'ENSG00000221914' => 'protein phosphatase 2, regulatory subunit B, alpha',
	'ENSG00000249213' => null,
	'ENSMUSG00000022052' => 'protein phosphatase 2, regulatory subunit B, alpha',
	'ENSMUSG00000022053' => 'early B cell factor 2',
	'ENSMUSG00000075549' => 'predicted gene 6878',
	'ENSMUSG00000080432' => 'predicted gene, 23178',
	'ENSMUSG00000093386' => 'RIKEN cDNA 1700120O09 gene',
	'ENSMUSG00000093472' => 'RIKEN cDNA 4930438E09 gene',
	'ENSMUSG00000093744' => 'predicted gene 20675',
	'ENSMUSG00000098365' => 'predicted gene, 27647'
)
$gene_name_arr = array(
	'ENSG00000199620' => 'RNA5SP258',
	'ENSG00000221818' => 'EBF2',
	'ENSG00000221914' => 'PPP2R2A',
	'ENSG00000249213' => 'RP11-98P2.1',
	'ENSMUSG00000022052' => 'Ppp2r2a',
	'ENSMUSG00000022053' => 'Ebf2',
	'ENSMUSG00000075549' => 'Gm6878',
	'ENSMUSG00000080432' => 'Gm23178',
	'ENSMUSG00000093386' => '1700120O09Rik',
	'ENSMUSG00000093472' => '4930438E09Rik',
	'ENSMUSG00000093744' => 'Gm20675',
	'ENSMUSG00000098365' => 'Gm27647'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0001',
			'tax_id' => '9606',
			'chromosome' => '8',
			'seq_start' => '25894448',
			'seq_end' => '26370810',
			'region_length' => '476362',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0002',
			'tax_id' => '10090',
			'chromosome' => '14',
			'seq_start' => '67015990',
			'seq_end' => '67383923',
			'region_length' => '367933',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0003',
			'tax_id' => '7955',
			'chromosome' => '5',
			'seq_start' => '70425726',
			'seq_end' => '70425853',
			'region_length' => '127',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 9 => 'Adrenal',
	(int) 20 => 'Bladder',
	(int) 28 => 'Brain',
	(int) 39 => 'Breast',
	(int) 53 => 'Colon',
	(int) 62 => 'Heart',
	(int) 71 => 'Kidney',
	(int) 80 => 'Liver',
	(int) 89 => 'Lung',
	(int) 101 => 'Muscle',
	(int) 109 => 'Ovary',
	(int) 124 => 'Placenta',
	(int) 138 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000362750' => array(
		'start' => '26136880',
		'end' => '26136998',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP258-201'
	),
	'ENST00000408929' => array(
		'start' => '25844362',
		'end' => '26041488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-002'
	),
	'ENST00000517825' => array(
		'start' => '26031450',
		'end' => '26045178',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'EBF2-003'
	),
	'ENST00000520164' => array(
		'start' => '25841730',
		'end' => '26045397',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-001'
	),
	'ENST00000535548' => array(
		'start' => '25844609',
		'end' => '25887916',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-201'
	),
	'ENST00000315985' => array(
		'start' => '26293216',
		'end' => '26370886',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-002'
	),
	'ENST00000380737' => array(
		'start' => '26291491',
		'end' => '26372680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-001'
	),
	'ENST00000517754' => array(
		'start' => '26361090',
		'end' => '26371129',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-003'
	),
	'ENST00000518208' => array(
		'start' => '26365098',
		'end' => '26370314',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-024'
	),
	'ENST00000518215' => array(
		'start' => '26354419',
		'end' => '26370363',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-020'
	),
	'ENST00000518254' => array(
		'start' => '26291528',
		'end' => '26354630',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-017'
	),
	'ENST00000518397' => array(
		'start' => '26291614',
		'end' => '26361012',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-021'
	),
	'ENST00000518890' => array(
		'start' => '26360600',
		'end' => '26370391',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-023'
	),
	'ENST00000519439' => array(
		'start' => '26293572',
		'end' => '26361085',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-018'
	),
	'ENST00000519636' => array(
		'start' => '26293216',
		'end' => '26360182',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-015'
	),
	'ENST00000520329' => array(
		'start' => '26291528',
		'end' => '26360281',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-010'
	),
	'ENST00000520438' => array(
		'start' => '26339919',
		'end' => '26360235',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-022'
	),
	'ENST00000521095' => array(
		'start' => '26292119',
		'end' => '26354550',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-009'
	),
	'ENST00000521484' => array(
		'start' => '26293590',
		'end' => '26360238',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-019'
	),
	'ENST00000521557' => array(
		'start' => '26293483',
		'end' => '26361033',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-016'
	),
	'ENST00000522150' => array(
		'start' => '26292113',
		'end' => '26339973',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-007'
	),
	'ENST00000522482' => array(
		'start' => '26293217',
		'end' => '26354637',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-014'
	),
	'ENST00000522535' => array(
		'start' => '26291835',
		'end' => '26361001',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-006'
	),
	'ENST00000523473' => array(
		'start' => '26292117',
		'end' => '26339973',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-008'
	),
	'ENST00000523925' => array(
		'start' => '26293112',
		'end' => '26361007',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-012'
	),
	'ENST00000523964' => array(
		'start' => '26298575',
		'end' => '26361044',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-011'
	),
	'ENST00000524099' => array(
		'start' => '26293206',
		'end' => '26360237',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-013'
	),
	'ENST00000524169' => array(
		'start' => '26291539',
		'end' => '26370324',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-004'
	),
	'ENST00000512187' => array(
		'start' => '26254883',
		'end' => '26256628',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-98P2.1-001'
	),
	'ENSMUST00000089230' => array(
		'start' => '67014057',
		'end' => '67072471',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ppp2r2a-201'
	),
	'ENSMUST00000022637' => array(
		'start' => '67233292',
		'end' => '67429777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-001'
	),
	'ENSMUST00000176029' => array(
		'start' => '67234644',
		'end' => '67428687',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-004'
	),
	'ENSMUST00000176161' => array(
		'start' => '67233586',
		'end' => '67430918',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-003'
	),
	'ENSMUST00000177231' => array(
		'start' => '67233603',
		'end' => '67236513',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ebf2-002'
	),
	'ENSMUST00000100448' => array(
		'start' => '67304888',
		'end' => '67314711',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm6878-001'
	),
	'ENSMUST00000116782' => array(
		'start' => '67274869',
		'end' => '67274963',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm23178-201'
	),
	'ENSMUST00000177127' => array(
		'start' => '67324894',
		'end' => '67335928',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => '1700120O09Rik-001'
	),
	'ENSMUST00000176841' => array(
		'start' => '67332042',
		'end' => '67397742',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => '4930438E09Rik-001'
	),
	'ENSMUST00000175861' => array(
		'start' => '67232437',
		'end' => '67233129',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Gm20675-001'
	),
	'ENSMUST00000184709' => array(
		'start' => '67074830',
		'end' => '67074947',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27647-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007MZ_0001' => array(
		'genes_in_region' => array(
			'ENSG00000221818' => array(
				[maximum depth reached]
			),
			'ENSG00000221914' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Liver',
			(int) 7 => 'Lung',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Lung',
			(int) 27 => 'Muscle',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Testis',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Brain',
			(int) 45 => 'Breast',
			(int) 46 => 'Colon',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adrenal',
			(int) 56 => 'Bladder',
			(int) 57 => 'Breast',
			(int) 58 => 'Kidney',
			(int) 59 => 'Lung',
			(int) 60 => 'Muscle',
			(int) 61 => 'Ovary',
			(int) 62 => 'Kidney',
			(int) 63 => 'Brain',
			(int) 64 => 'Breast',
			(int) 65 => 'Heart',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Ovary',
			(int) 69 => 'Colon',
			(int) 70 => 'Ovary',
			(int) 71 => 'Placenta',
			(int) 72 => 'Testis',
			(int) 73 => 'Bladder',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	),
	'CIL_0007MZ_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000022052' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000022053' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000075549' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093386' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093472' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093744' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Breast',
			(int) 22 => 'Colon',
			(int) 23 => 'Heart',
			(int) 24 => 'Kidney',
			(int) 25 => 'Lung',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Brain',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Liver',
			(int) 35 => 'Lung',
			(int) 36 => 'Muscle',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Ovary',
			(int) 41 => 'Adipose',
			(int) 42 => 'Adrenal',
			(int) 43 => 'Bladder',
			(int) 44 => 'Breast',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Ovary',
			(int) 49 => 'Placenta',
			(int) 50 => 'Testis',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Bladder',
			(int) 54 => 'Brain',
			(int) 55 => 'Breast',
			(int) 56 => 'Heart',
			(int) 57 => 'Liver',
			(int) 58 => 'Lung',
			(int) 59 => 'Placenta',
			(int) 60 => 'Testis',
			(int) 61 => 'Adipose',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Placenta',
			(int) 65 => 'Testis',
			(int) 66 => 'Adipose',
			(int) 67 => 'Adrenal',
			(int) 68 => 'Brain',
			(int) 69 => 'Breast',
			(int) 70 => 'Muscle',
			(int) 71 => 'Placenta'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007MZ_0003',
		'tax_id' => '7955',
		'chromosome' => '5',
		'seq_start' => '70425726',
		'seq_end' => '70425853',
		'region_length' => '127',
		'region_type' => 'UCNEbase',
		'el_id' => 'EBF2'
	)
)
$gene_el = array(
	'ENSMUST00000175861' => array(
		'Adipose' => array(
			'average_FPKM' => '0.583',
			'stddev_FPKM' => '0.18'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.368',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.128',
			'stddev_FPKM' => '0.00'
		),
		'Breast' => array(
			'average_FPKM' => '0.366',
			'stddev_FPKM' => '0.06'
		),
		'Muscle' => array(
			'average_FPKM' => '0.240',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.030',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000093744'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.583',
		'stddev_FPKM' => '0.18'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.368',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.128',
		'stddev_FPKM' => '0.00'
	),
	'Breast' => array(
		'average_FPKM' => '0.366',
		'stddev_FPKM' => '0.06'
	),
	'Muscle' => array(
		'average_FPKM' => '0.240',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.030',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000175861'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007MZ_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MZ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000199620' => 'RNA, 5S ribosomal pseudogene 258',
		'ENSG00000221818' => 'early B-cell factor 2',
		'ENSG00000221914' => 'protein phosphatase 2, regulatory subunit B, alpha',
		'ENSG00000249213' => null,
		'ENSMUSG00000022052' => 'protein phosphatase 2, regulatory subunit B, alpha',
		'ENSMUSG00000022053' => 'early B cell factor 2',
		'ENSMUSG00000075549' => 'predicted gene 6878',
		'ENSMUSG00000080432' => 'predicted gene, 23178',
		'ENSMUSG00000093386' => 'RIKEN cDNA 1700120O09 gene',
		'ENSMUSG00000093472' => 'RIKEN cDNA 4930438E09 gene',
		'ENSMUSG00000093744' => 'predicted gene 20675',
		'ENSMUSG00000098365' => 'predicted gene, 27647'
	),
	'gene_name_arr' => array(
		'ENSG00000199620' => 'RNA5SP258',
		'ENSG00000221818' => 'EBF2',
		'ENSG00000221914' => 'PPP2R2A',
		'ENSG00000249213' => 'RP11-98P2.1',
		'ENSMUSG00000022052' => 'Ppp2r2a',
		'ENSMUSG00000022053' => 'Ebf2',
		'ENSMUSG00000075549' => 'Gm6878',
		'ENSMUSG00000080432' => 'Gm23178',
		'ENSMUSG00000093386' => '1700120O09Rik',
		'ENSMUSG00000093472' => '4930438E09Rik',
		'ENSMUSG00000093744' => 'Gm20675',
		'ENSMUSG00000098365' => 'Gm27647'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 9 => 'Adrenal',
		(int) 20 => 'Bladder',
		(int) 28 => 'Brain',
		(int) 39 => 'Breast',
		(int) 53 => 'Colon',
		(int) 62 => 'Heart',
		(int) 71 => 'Kidney',
		(int) 80 => 'Liver',
		(int) 89 => 'Lung',
		(int) 101 => 'Muscle',
		(int) 109 => 'Ovary',
		(int) 124 => 'Placenta',
		(int) 138 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 40,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000362750' => array(
			'start' => '26136880',
			'end' => '26136998',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP258-201'
		),
		'ENST00000408929' => array(
			'start' => '25844362',
			'end' => '26041488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-002'
		),
		'ENST00000517825' => array(
			'start' => '26031450',
			'end' => '26045178',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'EBF2-003'
		),
		'ENST00000520164' => array(
			'start' => '25841730',
			'end' => '26045397',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-001'
		),
		'ENST00000535548' => array(
			'start' => '25844609',
			'end' => '25887916',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'EBF2-201'
		),
		'ENST00000315985' => array(
			'start' => '26293216',
			'end' => '26370886',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-002'
		),
		'ENST00000380737' => array(
			'start' => '26291491',
			'end' => '26372680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-001'
		),
		'ENST00000517754' => array(
			'start' => '26361090',
			'end' => '26371129',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-003'
		),
		'ENST00000518208' => array(
			'start' => '26365098',
			'end' => '26370314',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-024'
		),
		'ENST00000518215' => array(
			'start' => '26354419',
			'end' => '26370363',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-020'
		),
		'ENST00000518254' => array(
			'start' => '26291528',
			'end' => '26354630',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-017'
		),
		'ENST00000518397' => array(
			'start' => '26291614',
			'end' => '26361012',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-021'
		),
		'ENST00000518890' => array(
			'start' => '26360600',
			'end' => '26370391',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-023'
		),
		'ENST00000519439' => array(
			'start' => '26293572',
			'end' => '26361085',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-018'
		),
		'ENST00000519636' => array(
			'start' => '26293216',
			'end' => '26360182',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-015'
		),
		'ENST00000520329' => array(
			'start' => '26291528',
			'end' => '26360281',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PPP2R2A-010'
		),
		'ENST00000520438' => array(
			'start' => '26339919',
			'end' => '26360235',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-022'
		),
		'ENST00000521095' => array(
			'start' => '26292119',
			'end' => '26354550',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-009'
		),
		'ENST00000521484' => array(
			'start' => '26293590',
			'end' => '26360238',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PPP2R2A-019'
		),
		'ENST00000521557' => array(
			'start' => '26293483',
			'end' => '26361033',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-016'
		),
		'ENST00000522150' => array(
			'start' => '26292113',
			'end' => '26339973',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-007'
		),
		'ENST00000522482' => array(
			'start' => '26293217',
			'end' => '26354637',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-014'
		),
		'ENST00000522535' => array(
			'start' => '26291835',
			'end' => '26361001',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-006'
		),
		'ENST00000523473' => array(
			'start' => '26292117',
			'end' => '26339973',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-008'
		),
		'ENST00000523925' => array(
			'start' => '26293112',
			'end' => '26361007',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-012'
		),
		'ENST00000523964' => array(
			'start' => '26298575',
			'end' => '26361044',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-011'
		),
		'ENST00000524099' => array(
			'start' => '26293206',
			'end' => '26360237',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'PPP2R2A-013'
		),
		'ENST00000524169' => array(
			'start' => '26291539',
			'end' => '26370324',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PPP2R2A-004'
		),
		'ENST00000512187' => array(
			'start' => '26254883',
			'end' => '26256628',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-98P2.1-001'
		),
		'ENSMUST00000089230' => array(
			'start' => '67014057',
			'end' => '67072471',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ppp2r2a-201'
		),
		'ENSMUST00000022637' => array(
			'start' => '67233292',
			'end' => '67429777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-001'
		),
		'ENSMUST00000176029' => array(
			'start' => '67234644',
			'end' => '67428687',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-004'
		),
		'ENSMUST00000176161' => array(
			'start' => '67233586',
			'end' => '67430918',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ebf2-003'
		),
		'ENSMUST00000177231' => array(
			'start' => '67233603',
			'end' => '67236513',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ebf2-002'
		),
		'ENSMUST00000100448' => array(
			'start' => '67304888',
			'end' => '67314711',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm6878-001'
		),
		'ENSMUST00000116782' => array(
			'start' => '67274869',
			'end' => '67274963',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm23178-201'
		),
		'ENSMUST00000177127' => array(
			'start' => '67324894',
			'end' => '67335928',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => '1700120O09Rik-001'
		),
		'ENSMUST00000176841' => array(
			'start' => '67332042',
			'end' => '67397742',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => '4930438E09Rik-001'
		),
		'ENSMUST00000175861' => array(
			'start' => '67232437',
			'end' => '67233129',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Gm20675-001'
		),
		'ENSMUST00000184709' => array(
			'start' => '67074830',
			'end' => '67074947',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27647-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007MZ_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MZ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007MZ_0001' => array(
		'genes_in_region' => array(
			'ENSG00000221818' => array(
				[maximum depth reached]
			),
			'ENSG00000221914' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Liver',
			(int) 7 => 'Lung',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Lung',
			(int) 27 => 'Muscle',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Testis',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Brain',
			(int) 45 => 'Breast',
			(int) 46 => 'Colon',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adrenal',
			(int) 56 => 'Bladder',
			(int) 57 => 'Breast',
			(int) 58 => 'Kidney',
			(int) 59 => 'Lung',
			(int) 60 => 'Muscle',
			(int) 61 => 'Ovary',
			(int) 62 => 'Kidney',
			(int) 63 => 'Brain',
			(int) 64 => 'Breast',
			(int) 65 => 'Heart',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Ovary',
			(int) 69 => 'Colon',
			(int) 70 => 'Ovary',
			(int) 71 => 'Placenta',
			(int) 72 => 'Testis',
			(int) 73 => 'Bladder',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	),
	'CIL_0007MZ_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000022052' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000022053' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000075549' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093386' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093472' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093744' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Breast',
			(int) 22 => 'Colon',
			(int) 23 => 'Heart',
			(int) 24 => 'Kidney',
			(int) 25 => 'Lung',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Brain',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Liver',
			(int) 35 => 'Lung',
			(int) 36 => 'Muscle',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Ovary',
			(int) 41 => 'Adipose',
			(int) 42 => 'Adrenal',
			(int) 43 => 'Bladder',
			(int) 44 => 'Breast',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Ovary',
			(int) 49 => 'Placenta',
			(int) 50 => 'Testis',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Bladder',
			(int) 54 => 'Brain',
			(int) 55 => 'Breast',
			(int) 56 => 'Heart',
			(int) 57 => 'Liver',
			(int) 58 => 'Lung',
			(int) 59 => 'Placenta',
			(int) 60 => 'Testis',
			(int) 61 => 'Adipose',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Placenta',
			(int) 65 => 'Testis',
			(int) 66 => 'Adipose',
			(int) 67 => 'Adrenal',
			(int) 68 => 'Brain',
			(int) 69 => 'Breast',
			(int) 70 => 'Muscle',
			(int) 71 => 'Placenta'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000199620' => 'RNA, 5S ribosomal pseudogene 258',
	'ENSG00000221818' => 'early B-cell factor 2',
	'ENSG00000221914' => 'protein phosphatase 2, regulatory subunit B, alpha',
	'ENSG00000249213' => null,
	'ENSMUSG00000022052' => 'protein phosphatase 2, regulatory subunit B, alpha',
	'ENSMUSG00000022053' => 'early B cell factor 2',
	'ENSMUSG00000075549' => 'predicted gene 6878',
	'ENSMUSG00000080432' => 'predicted gene, 23178',
	'ENSMUSG00000093386' => 'RIKEN cDNA 1700120O09 gene',
	'ENSMUSG00000093472' => 'RIKEN cDNA 4930438E09 gene',
	'ENSMUSG00000093744' => 'predicted gene 20675',
	'ENSMUSG00000098365' => 'predicted gene, 27647'
)
$gene_name_arr = array(
	'ENSG00000199620' => 'RNA5SP258',
	'ENSG00000221818' => 'EBF2',
	'ENSG00000221914' => 'PPP2R2A',
	'ENSG00000249213' => 'RP11-98P2.1',
	'ENSMUSG00000022052' => 'Ppp2r2a',
	'ENSMUSG00000022053' => 'Ebf2',
	'ENSMUSG00000075549' => 'Gm6878',
	'ENSMUSG00000080432' => 'Gm23178',
	'ENSMUSG00000093386' => '1700120O09Rik',
	'ENSMUSG00000093472' => '4930438E09Rik',
	'ENSMUSG00000093744' => 'Gm20675',
	'ENSMUSG00000098365' => 'Gm27647'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0001',
			'tax_id' => '9606',
			'chromosome' => '8',
			'seq_start' => '25894448',
			'seq_end' => '26370810',
			'region_length' => '476362',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0002',
			'tax_id' => '10090',
			'chromosome' => '14',
			'seq_start' => '67015990',
			'seq_end' => '67383923',
			'region_length' => '367933',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MZ_0003',
			'tax_id' => '7955',
			'chromosome' => '5',
			'seq_start' => '70425726',
			'seq_end' => '70425853',
			'region_length' => '127',
			'region_type' => 'UCNEbase',
			'el_id' => 'EBF2'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 9 => 'Adrenal',
	(int) 20 => 'Bladder',
	(int) 28 => 'Brain',
	(int) 39 => 'Breast',
	(int) 53 => 'Colon',
	(int) 62 => 'Heart',
	(int) 71 => 'Kidney',
	(int) 80 => 'Liver',
	(int) 89 => 'Lung',
	(int) 101 => 'Muscle',
	(int) 109 => 'Ovary',
	(int) 124 => 'Placenta',
	(int) 138 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000362750' => array(
		'start' => '26136880',
		'end' => '26136998',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP258-201'
	),
	'ENST00000408929' => array(
		'start' => '25844362',
		'end' => '26041488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-002'
	),
	'ENST00000517825' => array(
		'start' => '26031450',
		'end' => '26045178',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'EBF2-003'
	),
	'ENST00000520164' => array(
		'start' => '25841730',
		'end' => '26045397',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-001'
	),
	'ENST00000535548' => array(
		'start' => '25844609',
		'end' => '25887916',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'EBF2-201'
	),
	'ENST00000315985' => array(
		'start' => '26293216',
		'end' => '26370886',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-002'
	),
	'ENST00000380737' => array(
		'start' => '26291491',
		'end' => '26372680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-001'
	),
	'ENST00000517754' => array(
		'start' => '26361090',
		'end' => '26371129',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-003'
	),
	'ENST00000518208' => array(
		'start' => '26365098',
		'end' => '26370314',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-024'
	),
	'ENST00000518215' => array(
		'start' => '26354419',
		'end' => '26370363',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-020'
	),
	'ENST00000518254' => array(
		'start' => '26291528',
		'end' => '26354630',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-017'
	),
	'ENST00000518397' => array(
		'start' => '26291614',
		'end' => '26361012',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-021'
	),
	'ENST00000518890' => array(
		'start' => '26360600',
		'end' => '26370391',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-023'
	),
	'ENST00000519439' => array(
		'start' => '26293572',
		'end' => '26361085',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-018'
	),
	'ENST00000519636' => array(
		'start' => '26293216',
		'end' => '26360182',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-015'
	),
	'ENST00000520329' => array(
		'start' => '26291528',
		'end' => '26360281',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PPP2R2A-010'
	),
	'ENST00000520438' => array(
		'start' => '26339919',
		'end' => '26360235',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-022'
	),
	'ENST00000521095' => array(
		'start' => '26292119',
		'end' => '26354550',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-009'
	),
	'ENST00000521484' => array(
		'start' => '26293590',
		'end' => '26360238',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PPP2R2A-019'
	),
	'ENST00000521557' => array(
		'start' => '26293483',
		'end' => '26361033',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-016'
	),
	'ENST00000522150' => array(
		'start' => '26292113',
		'end' => '26339973',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-007'
	),
	'ENST00000522482' => array(
		'start' => '26293217',
		'end' => '26354637',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-014'
	),
	'ENST00000522535' => array(
		'start' => '26291835',
		'end' => '26361001',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-006'
	),
	'ENST00000523473' => array(
		'start' => '26292117',
		'end' => '26339973',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-008'
	),
	'ENST00000523925' => array(
		'start' => '26293112',
		'end' => '26361007',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-012'
	),
	'ENST00000523964' => array(
		'start' => '26298575',
		'end' => '26361044',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-011'
	),
	'ENST00000524099' => array(
		'start' => '26293206',
		'end' => '26360237',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'PPP2R2A-013'
	),
	'ENST00000524169' => array(
		'start' => '26291539',
		'end' => '26370324',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PPP2R2A-004'
	),
	'ENST00000512187' => array(
		'start' => '26254883',
		'end' => '26256628',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-98P2.1-001'
	),
	'ENSMUST00000089230' => array(
		'start' => '67014057',
		'end' => '67072471',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ppp2r2a-201'
	),
	'ENSMUST00000022637' => array(
		'start' => '67233292',
		'end' => '67429777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-001'
	),
	'ENSMUST00000176029' => array(
		'start' => '67234644',
		'end' => '67428687',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-004'
	),
	'ENSMUST00000176161' => array(
		'start' => '67233586',
		'end' => '67430918',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ebf2-003'
	),
	'ENSMUST00000177231' => array(
		'start' => '67233603',
		'end' => '67236513',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ebf2-002'
	),
	'ENSMUST00000100448' => array(
		'start' => '67304888',
		'end' => '67314711',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm6878-001'
	),
	'ENSMUST00000116782' => array(
		'start' => '67274869',
		'end' => '67274963',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm23178-201'
	),
	'ENSMUST00000177127' => array(
		'start' => '67324894',
		'end' => '67335928',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => '1700120O09Rik-001'
	),
	'ENSMUST00000176841' => array(
		'start' => '67332042',
		'end' => '67397742',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => '4930438E09Rik-001'
	),
	'ENSMUST00000175861' => array(
		'start' => '67232437',
		'end' => '67233129',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Gm20675-001'
	),
	'ENSMUST00000184709' => array(
		'start' => '67074830',
		'end' => '67074947',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27647-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007MZ_0001' => array(
		'genes_in_region' => array(
			'ENSG00000221818' => array(
				[maximum depth reached]
			),
			'ENSG00000221914' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Ovary',
			(int) 3 => 'Placenta',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Liver',
			(int) 7 => 'Lung',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Lung',
			(int) 27 => 'Muscle',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Testis',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Brain',
			(int) 45 => 'Breast',
			(int) 46 => 'Colon',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adrenal',
			(int) 56 => 'Bladder',
			(int) 57 => 'Breast',
			(int) 58 => 'Kidney',
			(int) 59 => 'Lung',
			(int) 60 => 'Muscle',
			(int) 61 => 'Ovary',
			(int) 62 => 'Kidney',
			(int) 63 => 'Brain',
			(int) 64 => 'Breast',
			(int) 65 => 'Heart',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Ovary',
			(int) 69 => 'Colon',
			(int) 70 => 'Ovary',
			(int) 71 => 'Placenta',
			(int) 72 => 'Testis',
			(int) 73 => 'Bladder',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	),
	'CIL_0007MZ_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000022052' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000022053' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000075549' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093386' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093472' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000093744' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Breast',
			(int) 22 => 'Colon',
			(int) 23 => 'Heart',
			(int) 24 => 'Kidney',
			(int) 25 => 'Lung',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Brain',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Liver',
			(int) 35 => 'Lung',
			(int) 36 => 'Muscle',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Ovary',
			(int) 41 => 'Adipose',
			(int) 42 => 'Adrenal',
			(int) 43 => 'Bladder',
			(int) 44 => 'Breast',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Ovary',
			(int) 49 => 'Placenta',
			(int) 50 => 'Testis',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Bladder',
			(int) 54 => 'Brain',
			(int) 55 => 'Breast',
			(int) 56 => 'Heart',
			(int) 57 => 'Liver',
			(int) 58 => 'Lung',
			(int) 59 => 'Placenta',
			(int) 60 => 'Testis',
			(int) 61 => 'Adipose',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Placenta',
			(int) 65 => 'Testis',
			(int) 66 => 'Adipose',
			(int) 67 => 'Adrenal',
			(int) 68 => 'Brain',
			(int) 69 => 'Breast',
			(int) 70 => 'Muscle',
			(int) 71 => 'Placenta'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007MZ_0003',
		'tax_id' => '7955',
		'chromosome' => '5',
		'seq_start' => '70425726',
		'seq_end' => '70425853',
		'region_length' => '127',
		'region_type' => 'UCNEbase',
		'el_id' => 'EBF2'
	)
)
$gene_el = array(
	'ENSMUST00000175861' => array(
		'Adipose' => array(
			'average_FPKM' => '0.583',
			'stddev_FPKM' => '0.18'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.368',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.128',
			'stddev_FPKM' => '0.00'
		),
		'Breast' => array(
			'average_FPKM' => '0.366',
			'stddev_FPKM' => '0.06'
		),
		'Muscle' => array(
			'average_FPKM' => '0.240',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.030',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000093744'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.583',
		'stddev_FPKM' => '0.18'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.368',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.128',
		'stddev_FPKM' => '0.00'
	),
	'Breast' => array(
		'average_FPKM' => '0.366',
		'stddev_FPKM' => '0.06'
	),
	'Muscle' => array(
		'average_FPKM' => '0.240',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.030',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000175861'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
EBF2		UCNEbase	7955	5:70425726-70425853
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Danio rerio Ensembl (Zv9)

Expression Patterns

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